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implicit class DataFrameOps extends AnyRef

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  1. new DataFrameOps(df: DataFrame)

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  19. def withClinvar(clinvar: DataFrame)(implicit spark: SparkSession): DataFrame
  20. def withCosmic(cosmic: DataFrame)(implicit spark: SparkSession): DataFrame
  21. def withDbSNP(dbsnp: DataFrame): DataFrame
  22. def withFrequencies(participantId: Column, affectedStatus: Column, snv: DataFrame, splits: Seq[OccurrenceSplit], checkpoint: Boolean = false): DataFrame
  23. def withGeneExternalReference(implicit spark: SparkSession): DataFrame
  24. def withGenes(genes: DataFrame): DataFrame
  25. def withPopulations(thousandGenomes: DataFrame, topmed: DataFrame, gnomadGenomesV2: DataFrame, gnomadExomesV2: DataFrame, gnomadGenomesV3: DataFrame)(implicit spark: SparkSession): DataFrame
  26. def withSpliceAi(snv: DataFrame, indel: DataFrame, compute: Boolean = true)(implicit spark: SparkSession): DataFrame
  27. def withVariantExternalReference(implicit spark: SparkSession): DataFrame

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  1. def finalize(): Unit
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