Packages

case class EnrichedConsequences(chromosome: String = "1", start: Long = 69897, reference: String = "T", alternate: String = "C", ensembl_transcript_id: String = "ENST00000335137", ensembl_gene_id: String = "ENSG00000186092", vep_impact: String = "LOW", symbol: String = "OR4F5", ensembl_feature_id: String = "ENST00000335137", feature_type: String = "Transcript", strand: Int = 1, biotype: String = "protein_coding", exon: Exon = Exon(), intron: Intron = Intron(), hgvsc: String = "ENST00000335137.4:c.807T>C", hgvsp: String = "ENSP00000334393.3:p.Ser269=", cds_position: Int = 807, cdna_position: Int = 843, protein_position: Int = 269, amino_acids: AminoAcids = AminoAcids(), codons: CODONS = CODONS(), original_canonical: Boolean = true, refseq_mrna_id: Seq[String] = ..., refseq_protein_id: Option[String] = Some("NP_001005277"), aa_change: String = "p.Ser269=", coding_dna_change: String = "c.807T>C", impact_score: Int = 2, created_on: Timestamp = ..., updated_on: Timestamp = ..., normalized_consequences_oid: Timestamp = ..., consequence: Seq[String] = Seq("synonymous"), predictions: PREDICTIONS = PREDICTIONS(), conservations: CONSERVATIONS = CONSERVATIONS(), consequences_oid: Timestamp = ..., uniprot_id: Option[String] = Some("Q6IEY1"), mane_select: Boolean = true, mane_plus: Boolean = true, canonical: Boolean = true, picked: Option[Boolean] = Some(true)) extends Product with Serializable

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  1. EnrichedConsequences
  2. Serializable
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  4. Product
  5. Equals
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Instance Constructors

  1. new EnrichedConsequences(chromosome: String = "1", start: Long = 69897, reference: String = "T", alternate: String = "C", ensembl_transcript_id: String = "ENST00000335137", ensembl_gene_id: String = "ENSG00000186092", vep_impact: String = "LOW", symbol: String = "OR4F5", ensembl_feature_id: String = "ENST00000335137", feature_type: String = "Transcript", strand: Int = 1, biotype: String = "protein_coding", exon: Exon = Exon(), intron: Intron = Intron(), hgvsc: String = "ENST00000335137.4:c.807T>C", hgvsp: String = "ENSP00000334393.3:p.Ser269=", cds_position: Int = 807, cdna_position: Int = 843, protein_position: Int = 269, amino_acids: AminoAcids = AminoAcids(), codons: CODONS = CODONS(), original_canonical: Boolean = true, refseq_mrna_id: Seq[String] = ..., refseq_protein_id: Option[String] = Some("NP_001005277"), aa_change: String = "p.Ser269=", coding_dna_change: String = "c.807T>C", impact_score: Int = 2, created_on: Timestamp = ..., updated_on: Timestamp = ..., normalized_consequences_oid: Timestamp = ..., consequence: Seq[String] = Seq("synonymous"), predictions: PREDICTIONS = PREDICTIONS(), conservations: CONSERVATIONS = CONSERVATIONS(), consequences_oid: Timestamp = ..., uniprot_id: Option[String] = Some("Q6IEY1"), mane_select: Boolean = true, mane_plus: Boolean = true, canonical: Boolean = true, picked: Option[Boolean] = Some(true))

Value Members

  1. final def !=(arg0: Any): Boolean
    Definition Classes
    AnyRef → Any
  2. final def ##(): Int
    Definition Classes
    AnyRef → Any
  3. final def ==(arg0: Any): Boolean
    Definition Classes
    AnyRef → Any
  4. val aa_change: String
  5. val alternate: String
  6. val amino_acids: AminoAcids
  7. final def asInstanceOf[T0]: T0
    Definition Classes
    Any
  8. val biotype: String
  9. val canonical: Boolean
  10. val cdna_position: Int
  11. val cds_position: Int
  12. val chromosome: String
  13. def clone(): AnyRef
    Attributes
    protected[lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... ) @native() @HotSpotIntrinsicCandidate()
  14. val coding_dna_change: String
  15. val codons: CODONS
  16. val consequence: Seq[String]
  17. val consequences_oid: Timestamp
  18. val conservations: CONSERVATIONS
  19. val created_on: Timestamp
  20. val ensembl_feature_id: String
  21. val ensembl_gene_id: String
  22. val ensembl_transcript_id: String
  23. final def eq(arg0: AnyRef): Boolean
    Definition Classes
    AnyRef
  24. val exon: Exon
  25. val feature_type: String
  26. final def getClass(): Class[_]
    Definition Classes
    AnyRef → Any
    Annotations
    @native() @HotSpotIntrinsicCandidate()
  27. val hgvsc: String
  28. val hgvsp: String
  29. val impact_score: Int
  30. val intron: Intron
  31. final def isInstanceOf[T0]: Boolean
    Definition Classes
    Any
  32. val mane_plus: Boolean
  33. val mane_select: Boolean
  34. final def ne(arg0: AnyRef): Boolean
    Definition Classes
    AnyRef
  35. val normalized_consequences_oid: Timestamp
  36. final def notify(): Unit
    Definition Classes
    AnyRef
    Annotations
    @native() @HotSpotIntrinsicCandidate()
  37. final def notifyAll(): Unit
    Definition Classes
    AnyRef
    Annotations
    @native() @HotSpotIntrinsicCandidate()
  38. val original_canonical: Boolean
  39. val picked: Option[Boolean]
  40. val predictions: PREDICTIONS
  41. val protein_position: Int
  42. val reference: String
  43. val refseq_mrna_id: Seq[String]
  44. val refseq_protein_id: Option[String]
  45. val start: Long
  46. val strand: Int
  47. val symbol: String
  48. final def synchronized[T0](arg0: ⇒ T0): T0
    Definition Classes
    AnyRef
  49. val uniprot_id: Option[String]
  50. val updated_on: Timestamp
  51. val vep_impact: String
  52. final def wait(arg0: Long, arg1: Int): Unit
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  53. final def wait(arg0: Long): Unit
    Definition Classes
    AnyRef
    Annotations
    @throws( ... ) @native()
  54. final def wait(): Unit
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

Deprecated Value Members

  1. def finalize(): Unit
    Attributes
    protected[lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] ) @Deprecated
    Deprecated

Inherited from Serializable

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Inherited from AnyRef

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