Packages

package frequency

Type Members

  1. case class Frequency(ac: Long = 5, an: Long = 8, pc: Long = 3, pn: Long = 4, hom: Long = 2, af: Double = 0.625, pf: Double = 0.75) extends Product with Serializable
  2. case class FrequencyByStudyId(study_id: String = "S1", total: Frequency = ..., participant_ids: Set[String] = Set("P1", "P2"), transmissions: Set[String] = Set("AR", "AD"), study_code: String = "STUDY_CODE_1") extends Product with Serializable
  3. case class FrequencyByStudyIdAffected(study_id: String = "S1", affected: Frequency = Frequency(0, 0, 0, 0, 0), not_affected: Frequency = Frequency(), total: Frequency = Frequency(), participant_ids: Set[String] = Set("P1", "P2"), transmissions: Set[String] = Set("AR", "AD"), study_code: String = "STUDY_CODE_1") extends Product with Serializable
  4. case class GlobalFrequency(total: Frequency = Frequency(), zygosities: Set[String] = Set("HOM", "HET")) extends Product with Serializable
  5. case class GlobalFrequencyAffected(affected: Frequency = Frequency(0, 0, 0, 0, 0), not_affected: Frequency = Frequency(), total: Frequency = Frequency(), zygosities: Set[String] = Set("HOM", "HET")) extends Product with Serializable
  6. case class GlobalSplit(study_codes: Set[String] = Set("STUDY_CODE_1", "STUDY_CODE_2")) extends Product with Serializable
  7. case class SimpleOutput(chromosome: String = "1", start: Long = 69897, reference: String = "T", alternate: String = "C", ac: Long) extends Product with Serializable
  8. case class SplitByStudyId(study_id: String = "S1", study_code: String = "STUDY_CODE_1", zygosities: Set[String] = Set("HOM", "HET")) extends Product with Serializable
  9. case class VariantFrequencyOutputByStudy(chromosome: String = "1", start: Long = 69897, reference: String = "T", alternate: String = "C", frequency_kf: GlobalFrequency = ..., frequency_by_study_id: Set[FrequencyByStudyId] = ..., studies: Set[SplitByStudyId] = ..., global: GlobalSplit = GlobalSplit()) extends Product with Serializable
  10. case class VariantFrequencyOutputByStudyAffected(chromosome: String = "1", start: Long = 69897, reference: String = "T", alternate: String = "C", frequency_kf: GlobalFrequencyAffected = ..., frequency_by_study_id: Set[FrequencyByStudyIdAffected] = ...) extends Product with Serializable

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