c

bio.ferlab.datalake.testutils.models.normalized

NormalizedCosmicMutationSet

case class NormalizedCosmicMutationSet(chromosome: String = "2", start: Long = 197402110, end: Long = 197402110, reference: String = "T", alternate: String = "C", mutation_url: String = ..., shared_aa: Int = 9, genomic_mutation_id: String = "COSV59205318", cosmic_sample_mutated: Int = 699, cosmic_sample_tested: Int = 86821, dnds_disease_qval_sig: Seq[String] = Seq("breast=4.73e-24"), mutation_significance_tier: String = "2", onc_tsg: Seq[String] = Seq("oncogene"), cgc_tier: Int = 1, gene_name: String = "SF3B1", accession_number: String = "ENST00000335508.6", legacy_mutation_id: String = "COSM84677", mutation_cds: String = "c.2098A>G", mutation_aa: String = "p.K700E", disease: Seq[String] = ..., wgs_disease: Seq[String] = ..., aa_mut_start: Int = 700, aa_mut_stop: Int = 700, aa_wt_allele_seq: String = "K", aa_mut_allele_seq: String = "E", mutation_description_cds: String = "Substitution", mutation_description_aa: String = "Substitution - Missense", ontology_mutation_code: String = "SO:0001583") extends Product with Serializable

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  1. NormalizedCosmicMutationSet
  2. Serializable
  3. Serializable
  4. Product
  5. Equals
  6. AnyRef
  7. Any
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Instance Constructors

  1. new NormalizedCosmicMutationSet(chromosome: String = "2", start: Long = 197402110, end: Long = 197402110, reference: String = "T", alternate: String = "C", mutation_url: String = ..., shared_aa: Int = 9, genomic_mutation_id: String = "COSV59205318", cosmic_sample_mutated: Int = 699, cosmic_sample_tested: Int = 86821, dnds_disease_qval_sig: Seq[String] = Seq("breast=4.73e-24"), mutation_significance_tier: String = "2", onc_tsg: Seq[String] = Seq("oncogene"), cgc_tier: Int = 1, gene_name: String = "SF3B1", accession_number: String = "ENST00000335508.6", legacy_mutation_id: String = "COSM84677", mutation_cds: String = "c.2098A>G", mutation_aa: String = "p.K700E", disease: Seq[String] = ..., wgs_disease: Seq[String] = ..., aa_mut_start: Int = 700, aa_mut_stop: Int = 700, aa_wt_allele_seq: String = "K", aa_mut_allele_seq: String = "E", mutation_description_cds: String = "Substitution", mutation_description_aa: String = "Substitution - Missense", ontology_mutation_code: String = "SO:0001583")

Value Members

  1. final def !=(arg0: Any): Boolean
    Definition Classes
    AnyRef → Any
  2. final def ##(): Int
    Definition Classes
    AnyRef → Any
  3. final def ==(arg0: Any): Boolean
    Definition Classes
    AnyRef → Any
  4. val aa_mut_allele_seq: String
  5. val aa_mut_start: Int
  6. val aa_mut_stop: Int
  7. val aa_wt_allele_seq: String
  8. val accession_number: String
  9. val alternate: String
  10. final def asInstanceOf[T0]: T0
    Definition Classes
    Any
  11. val cgc_tier: Int
  12. val chromosome: String
  13. def clone(): AnyRef
    Attributes
    protected[lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... ) @native() @HotSpotIntrinsicCandidate()
  14. val cosmic_sample_mutated: Int
  15. val cosmic_sample_tested: Int
  16. val disease: Seq[String]
  17. val dnds_disease_qval_sig: Seq[String]
  18. val end: Long
  19. final def eq(arg0: AnyRef): Boolean
    Definition Classes
    AnyRef
  20. val gene_name: String
  21. val genomic_mutation_id: String
  22. final def getClass(): Class[_]
    Definition Classes
    AnyRef → Any
    Annotations
    @native() @HotSpotIntrinsicCandidate()
  23. final def isInstanceOf[T0]: Boolean
    Definition Classes
    Any
  24. val legacy_mutation_id: String
  25. val mutation_aa: String
  26. val mutation_cds: String
  27. val mutation_description_aa: String
  28. val mutation_description_cds: String
  29. val mutation_significance_tier: String
  30. val mutation_url: String
  31. final def ne(arg0: AnyRef): Boolean
    Definition Classes
    AnyRef
  32. final def notify(): Unit
    Definition Classes
    AnyRef
    Annotations
    @native() @HotSpotIntrinsicCandidate()
  33. final def notifyAll(): Unit
    Definition Classes
    AnyRef
    Annotations
    @native() @HotSpotIntrinsicCandidate()
  34. val onc_tsg: Seq[String]
  35. val ontology_mutation_code: String
  36. val reference: String
  37. val shared_aa: Int
  38. val start: Long
  39. final def synchronized[T0](arg0: ⇒ T0): T0
    Definition Classes
    AnyRef
  40. final def wait(arg0: Long, arg1: Int): Unit
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  41. final def wait(arg0: Long): Unit
    Definition Classes
    AnyRef
    Annotations
    @throws( ... ) @native()
  42. final def wait(): Unit
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  43. val wgs_disease: Seq[String]

Deprecated Value Members

  1. def finalize(): Unit
    Attributes
    protected[lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] ) @Deprecated
    Deprecated

Inherited from Serializable

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