c

bio.ferlab.datalake.testutils.models.normalized

NormalizedGnomadConstraint

case class NormalizedGnomadConstraint(chromosome: String = "19", start: Long = 47567444, end: Long = 47617009, symbol: String = "ZC3H4", transcript: String = "ENST00000253048", obs_mis: Int = 746, exp_mis: Float = 798.16f, oe_mis: Float = 0.93465f, mu_mis: Float = 5.4158E-5f, possible_mis: Long = 8378, obs_mis_pphen: Int = 95, exp_mis_pphen: Float = 115.73f, oe_mis_pphen: Float = 0.8209f, possible_mis_pphen: Long = 1145, obs_syn: Int = 446, exp_syn: Float = 343.01f, oe_syn: Float = 1.3002f, mu_syn: Float = 2.5301E-5f, possible_syn: Long = 2661, obs_lof: Int = 0, mu_lof: Float = 3.7692E-6f, possible_lof: Int = 543, exp_lof: Float = 54.645f, pLI: Float = 1.0f, pNull: Double = 1.8815E-22, pRec: Double = 2.3777E-9, oe_lof: Float = 0.0f, oe_syn_lower: Float = 1.202f, oe_syn_upper: Float = 1.406f, oe_mis_lower: Float = 0.879f, oe_mis_upper: Float = 0.993f, oe_lof_lower: Float = 0.0f, oe_lof_upper: Float = 0.054f, constraint_flag: String = "syn_outlier", syn_z: Float = -4.3711f, mis_z: Float = 0.65604f, lof_z: Float = 6.8501f, oe_lof_upper_rank: Int = 22, oe_lof_upper_bin: Int = 0, oe_lof_upper_bin_6: Int = 0, n_sites: Int = 10, classic_caf: Float = 4.704E-5f, max_af: Float = 9.8703E-6f, no_lofs: Long = 124783, obs_het_lof: Int = 7, obs_hom_lof: Int = 0, defined: Long = 124790, p: Float = 2.8048E-5f, exp_hom_lof: Float = 9.8168E-5f, classic_caf_afr: Float = 8.5353E-5f, classic_caf_amr: Float = 3.4858E-5f, classic_caf_asj: Float = 0.0f, classic_caf_eas: Float = 0.0f, classic_caf_fin: Float = 0.0f, classic_caf_nfe: Float = 6.3937E-5f, classic_caf_oth: Float = 0.0f, classic_caf_sas: Float = 6.61E-5f, p_afr: Float = 6.456E-5f, p_amr: Float = 2.8964E-5f, p_asj: Float = 0.0f, p_eas: Float = 0.0f, p_fin: Float = 0.0f, p_nfe: Float = 3.531E-5f, p_oth: Float = 0.0f, p_sas: Float = 3.2678E-5f, transcript_type: String = "protein_coding", gene_id: String = "ENSG00000130749", transcript_level: Int = 2, cds_length: Long = 3909, num_coding_exons: Int = 14, gene_type: String = "protein_coding", gene_length: Long = 49566, exac_pLI: Float = 1.0f, exac_obs_lof: Int = 0, exac_exp_lof: Float = 42.17f, exac_oe_lof: Float = 0.0f, brain_expression: String = "NA") extends Product with Serializable

Linear Supertypes
Serializable, Serializable, Product, Equals, AnyRef, Any
Ordering
  1. Alphabetic
  2. By Inheritance
Inherited
  1. NormalizedGnomadConstraint
  2. Serializable
  3. Serializable
  4. Product
  5. Equals
  6. AnyRef
  7. Any
  1. Hide All
  2. Show All
Visibility
  1. Public
  2. All

Instance Constructors

  1. new NormalizedGnomadConstraint(chromosome: String = "19", start: Long = 47567444, end: Long = 47617009, symbol: String = "ZC3H4", transcript: String = "ENST00000253048", obs_mis: Int = 746, exp_mis: Float = 798.16f, oe_mis: Float = 0.93465f, mu_mis: Float = 5.4158E-5f, possible_mis: Long = 8378, obs_mis_pphen: Int = 95, exp_mis_pphen: Float = 115.73f, oe_mis_pphen: Float = 0.8209f, possible_mis_pphen: Long = 1145, obs_syn: Int = 446, exp_syn: Float = 343.01f, oe_syn: Float = 1.3002f, mu_syn: Float = 2.5301E-5f, possible_syn: Long = 2661, obs_lof: Int = 0, mu_lof: Float = 3.7692E-6f, possible_lof: Int = 543, exp_lof: Float = 54.645f, pLI: Float = 1.0f, pNull: Double = 1.8815E-22, pRec: Double = 2.3777E-9, oe_lof: Float = 0.0f, oe_syn_lower: Float = 1.202f, oe_syn_upper: Float = 1.406f, oe_mis_lower: Float = 0.879f, oe_mis_upper: Float = 0.993f, oe_lof_lower: Float = 0.0f, oe_lof_upper: Float = 0.054f, constraint_flag: String = "syn_outlier", syn_z: Float = -4.3711f, mis_z: Float = 0.65604f, lof_z: Float = 6.8501f, oe_lof_upper_rank: Int = 22, oe_lof_upper_bin: Int = 0, oe_lof_upper_bin_6: Int = 0, n_sites: Int = 10, classic_caf: Float = 4.704E-5f, max_af: Float = 9.8703E-6f, no_lofs: Long = 124783, obs_het_lof: Int = 7, obs_hom_lof: Int = 0, defined: Long = 124790, p: Float = 2.8048E-5f, exp_hom_lof: Float = 9.8168E-5f, classic_caf_afr: Float = 8.5353E-5f, classic_caf_amr: Float = 3.4858E-5f, classic_caf_asj: Float = 0.0f, classic_caf_eas: Float = 0.0f, classic_caf_fin: Float = 0.0f, classic_caf_nfe: Float = 6.3937E-5f, classic_caf_oth: Float = 0.0f, classic_caf_sas: Float = 6.61E-5f, p_afr: Float = 6.456E-5f, p_amr: Float = 2.8964E-5f, p_asj: Float = 0.0f, p_eas: Float = 0.0f, p_fin: Float = 0.0f, p_nfe: Float = 3.531E-5f, p_oth: Float = 0.0f, p_sas: Float = 3.2678E-5f, transcript_type: String = "protein_coding", gene_id: String = "ENSG00000130749", transcript_level: Int = 2, cds_length: Long = 3909, num_coding_exons: Int = 14, gene_type: String = "protein_coding", gene_length: Long = 49566, exac_pLI: Float = 1.0f, exac_obs_lof: Int = 0, exac_exp_lof: Float = 42.17f, exac_oe_lof: Float = 0.0f, brain_expression: String = "NA")

Value Members

  1. final def !=(arg0: Any): Boolean
    Definition Classes
    AnyRef → Any
  2. final def ##(): Int
    Definition Classes
    AnyRef → Any
  3. final def ==(arg0: Any): Boolean
    Definition Classes
    AnyRef → Any
  4. final def asInstanceOf[T0]: T0
    Definition Classes
    Any
  5. val brain_expression: String
  6. val cds_length: Long
  7. val chromosome: String
  8. val classic_caf: Float
  9. val classic_caf_afr: Float
  10. val classic_caf_amr: Float
  11. val classic_caf_asj: Float
  12. val classic_caf_eas: Float
  13. val classic_caf_fin: Float
  14. val classic_caf_nfe: Float
  15. val classic_caf_oth: Float
  16. val classic_caf_sas: Float
  17. def clone(): AnyRef
    Attributes
    protected[lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... ) @native() @HotSpotIntrinsicCandidate()
  18. val constraint_flag: String
  19. val defined: Long
  20. val end: Long
  21. final def eq(arg0: AnyRef): Boolean
    Definition Classes
    AnyRef
  22. val exac_exp_lof: Float
  23. val exac_obs_lof: Int
  24. val exac_oe_lof: Float
  25. val exac_pLI: Float
  26. val exp_hom_lof: Float
  27. val exp_lof: Float
  28. val exp_mis: Float
  29. val exp_mis_pphen: Float
  30. val exp_syn: Float
  31. val gene_id: String
  32. val gene_length: Long
  33. val gene_type: String
  34. final def getClass(): Class[_]
    Definition Classes
    AnyRef → Any
    Annotations
    @native() @HotSpotIntrinsicCandidate()
  35. final def isInstanceOf[T0]: Boolean
    Definition Classes
    Any
  36. val lof_z: Float
  37. val max_af: Float
  38. val mis_z: Float
  39. val mu_lof: Float
  40. val mu_mis: Float
  41. val mu_syn: Float
  42. val n_sites: Int
  43. final def ne(arg0: AnyRef): Boolean
    Definition Classes
    AnyRef
  44. val no_lofs: Long
  45. final def notify(): Unit
    Definition Classes
    AnyRef
    Annotations
    @native() @HotSpotIntrinsicCandidate()
  46. final def notifyAll(): Unit
    Definition Classes
    AnyRef
    Annotations
    @native() @HotSpotIntrinsicCandidate()
  47. val num_coding_exons: Int
  48. val obs_het_lof: Int
  49. val obs_hom_lof: Int
  50. val obs_lof: Int
  51. val obs_mis: Int
  52. val obs_mis_pphen: Int
  53. val obs_syn: Int
  54. val oe_lof: Float
  55. val oe_lof_lower: Float
  56. val oe_lof_upper: Float
  57. val oe_lof_upper_bin: Int
  58. val oe_lof_upper_bin_6: Int
  59. val oe_lof_upper_rank: Int
  60. val oe_mis: Float
  61. val oe_mis_lower: Float
  62. val oe_mis_pphen: Float
  63. val oe_mis_upper: Float
  64. val oe_syn: Float
  65. val oe_syn_lower: Float
  66. val oe_syn_upper: Float
  67. val p: Float
  68. val pLI: Float
  69. val pNull: Double
  70. val pRec: Double
  71. val p_afr: Float
  72. val p_amr: Float
  73. val p_asj: Float
  74. val p_eas: Float
  75. val p_fin: Float
  76. val p_nfe: Float
  77. val p_oth: Float
  78. val p_sas: Float
  79. val possible_lof: Int
  80. val possible_mis: Long
  81. val possible_mis_pphen: Long
  82. val possible_syn: Long
  83. val start: Long
  84. val symbol: String
  85. val syn_z: Float
  86. final def synchronized[T0](arg0: ⇒ T0): T0
    Definition Classes
    AnyRef
  87. val transcript: String
  88. val transcript_level: Int
  89. val transcript_type: String
  90. final def wait(arg0: Long, arg1: Int): Unit
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  91. final def wait(arg0: Long): Unit
    Definition Classes
    AnyRef
    Annotations
    @throws( ... ) @native()
  92. final def wait(): Unit
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

Deprecated Value Members

  1. def finalize(): Unit
    Attributes
    protected[lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] ) @Deprecated
    Deprecated

Inherited from Serializable

Inherited from Serializable

Inherited from Product

Inherited from Equals

Inherited from AnyRef

Inherited from Any

Ungrouped