Packages

case class PreparedVariantCentric(chromosome: String = "1", start: Long = 69897, reference: String = "T", alternate: String = "C", end: Long = 69898, locus: String = "1-69897-T-C", hash: String = ..., hgvsg: String = "chr1:g.69897T>C", variant_class: String = "SNV", assembly_version: String = "GRCh38", frequency: FREQUENCY = FREQUENCY(), external_frequencies: EXTERNAL_FREQUENCIES = EXTERNAL_FREQUENCIES(), clinvar: CLINVAR = CLINVAR(), rsnumber: String = "rs200676709", dna_change: String = "T>C", max_impact_score: Int = 10, genes: Set[GENES] = ..., cmc: CMC = CMC(), variant_external_reference: Seq[String] = Seq("DBSNP", "Clinvar", "Cosmic"), gene_external_reference: Seq[String] = ...) extends Product with Serializable

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Serializable, Serializable, Product, Equals, AnyRef, Any
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  1. PreparedVariantCentric
  2. Serializable
  3. Serializable
  4. Product
  5. Equals
  6. AnyRef
  7. Any
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Visibility
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Instance Constructors

  1. new PreparedVariantCentric(chromosome: String = "1", start: Long = 69897, reference: String = "T", alternate: String = "C", end: Long = 69898, locus: String = "1-69897-T-C", hash: String = ..., hgvsg: String = "chr1:g.69897T>C", variant_class: String = "SNV", assembly_version: String = "GRCh38", frequency: FREQUENCY = FREQUENCY(), external_frequencies: EXTERNAL_FREQUENCIES = EXTERNAL_FREQUENCIES(), clinvar: CLINVAR = CLINVAR(), rsnumber: String = "rs200676709", dna_change: String = "T>C", max_impact_score: Int = 10, genes: Set[GENES] = ..., cmc: CMC = CMC(), variant_external_reference: Seq[String] = Seq("DBSNP", "Clinvar", "Cosmic"), gene_external_reference: Seq[String] = ...)

Value Members

  1. final def !=(arg0: Any): Boolean
    Definition Classes
    AnyRef → Any
  2. final def ##(): Int
    Definition Classes
    AnyRef → Any
  3. final def ==(arg0: Any): Boolean
    Definition Classes
    AnyRef → Any
  4. val alternate: String
  5. final def asInstanceOf[T0]: T0
    Definition Classes
    Any
  6. val assembly_version: String
  7. val chromosome: String
  8. val clinvar: CLINVAR
  9. def clone(): AnyRef
    Attributes
    protected[lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... ) @native() @HotSpotIntrinsicCandidate()
  10. val cmc: CMC
  11. val dna_change: String
  12. val end: Long
  13. final def eq(arg0: AnyRef): Boolean
    Definition Classes
    AnyRef
  14. val external_frequencies: EXTERNAL_FREQUENCIES
  15. val frequency: FREQUENCY
  16. val gene_external_reference: Seq[String]
  17. val genes: Set[GENES]
  18. final def getClass(): Class[_]
    Definition Classes
    AnyRef → Any
    Annotations
    @native() @HotSpotIntrinsicCandidate()
  19. val hash: String
  20. val hgvsg: String
  21. final def isInstanceOf[T0]: Boolean
    Definition Classes
    Any
  22. val locus: String
  23. val max_impact_score: Int
  24. final def ne(arg0: AnyRef): Boolean
    Definition Classes
    AnyRef
  25. final def notify(): Unit
    Definition Classes
    AnyRef
    Annotations
    @native() @HotSpotIntrinsicCandidate()
  26. final def notifyAll(): Unit
    Definition Classes
    AnyRef
    Annotations
    @native() @HotSpotIntrinsicCandidate()
  27. val reference: String
  28. val rsnumber: String
  29. val start: Long
  30. final def synchronized[T0](arg0: ⇒ T0): T0
    Definition Classes
    AnyRef
  31. val variant_class: String
  32. val variant_external_reference: Seq[String]
  33. final def wait(arg0: Long, arg1: Int): Unit
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  34. final def wait(arg0: Long): Unit
    Definition Classes
    AnyRef
    Annotations
    @throws( ... ) @native()
  35. final def wait(): Unit
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

Deprecated Value Members

  1. def finalize(): Unit
    Attributes
    protected[lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] ) @Deprecated
    Deprecated

Inherited from Serializable

Inherited from Serializable

Inherited from Product

Inherited from Equals

Inherited from AnyRef

Inherited from Any

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