Packages

case class InfoCSQ(Allele: String = "C", Consequence: List[String] = List("synonymous_variant"), IMPACT: String = "LOW", SYMBOL: String = "OR4F5", Gene: String = "ENSG00000186092", Feature_type: String = "Transcript", Feature: String = "ENST00000335137", BIOTYPE: String = "protein_coding", EXON: Exon = Exon("1", 1), INTRON: Intron = Intron(None, None), HGVSc: String = "ENST00000335137.4:c.807T>C", HGVSp: String = "ENSP00000334393.3:p.Ser269%3D", cDNA_position: Int = 843, CDS_position: Int = 807, Protein_position: Int = 269, Amino_acids: AminoAcids = AminoAcids("S", None), Codons: CODONS = CODONS("tcT", "tcC"), Existing_variation: List[String] = List("rs200676709"), DISTANCE: Option[Int] = None, STRAND: Int = 1, FLAGS: Option[List[String]] = None, PICK: String = "1", VARIANT_CLASS: String = "SNV", SYMBOL_SOURCE: String = "HGNC", HGNC_ID: String = "HGNC:14825", CANONICAL: String = "YES", RefSeq: String = ..., HGVS_OFFSET: Option[String] = None, HGVSg: String = "chr1:g.69897T>C", CLIN_SIG: Option[String] = None, SOMATIC: Option[String] = None, PHENO: Option[String] = None, PUBMED: Option[String] = Some("29135816"), CADD_raw_rankscore: Option[String] = None, DANN_rankscore: Option[String] = None, Ensembl_geneid: Option[String] = None, Ensembl_transcriptid: Option[String] = None, ExAC_AC: Option[String] = None, ExAC_AF: Option[String] = None, FATHMM_converted_rankscore: Option[String] = None, FATHMM_pred: Option[String] = None, GTEx_V7_tissue: Option[String] = None, Interpro_domain: Option[String] = None, LRT_converted_rankscore: Option[String] = None, LRT_pred: Option[String] = None, Polyphen2_HVAR_pred: Option[String] = None, Polyphen2_HVAR_rankscore: Option[String] = None, REVEL_rankscore: Option[String] = None, SIFT_converted_rankscore: Option[String] = None, SIFT_pred: Option[String] = None, UK10K_AC: Option[String] = None, UK10K_AF: Option[String] = None, clinvar_MedGen_id: Option[String] = None, clinvar_OMIM_id: Option[String] = None, clinvar_Orphanet_id: Option[String] = None, clinvar_clnsig: Option[String] = None, clinvar_id: Option[String] = None, clinvar_trait: Option[String] = None, gnomAD_exomes_AC: Option[String] = None, gnomAD_exomes_AF: Option[String] = None, gnomAD_genomes_AC: Option[String] = None, gnomAD_genomes_AF: Option[String] = None, phyloP17way_primate_rankscore: Option[String] = None, rs_dbSNP151: Option[String] = None) extends Product with Serializable

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  1. InfoCSQ
  2. Serializable
  3. Serializable
  4. Product
  5. Equals
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Instance Constructors

  1. new InfoCSQ(Allele: String = "C", Consequence: List[String] = List("synonymous_variant"), IMPACT: String = "LOW", SYMBOL: String = "OR4F5", Gene: String = "ENSG00000186092", Feature_type: String = "Transcript", Feature: String = "ENST00000335137", BIOTYPE: String = "protein_coding", EXON: Exon = Exon("1", 1), INTRON: Intron = Intron(None, None), HGVSc: String = "ENST00000335137.4:c.807T>C", HGVSp: String = "ENSP00000334393.3:p.Ser269%3D", cDNA_position: Int = 843, CDS_position: Int = 807, Protein_position: Int = 269, Amino_acids: AminoAcids = AminoAcids("S", None), Codons: CODONS = CODONS("tcT", "tcC"), Existing_variation: List[String] = List("rs200676709"), DISTANCE: Option[Int] = None, STRAND: Int = 1, FLAGS: Option[List[String]] = None, PICK: String = "1", VARIANT_CLASS: String = "SNV", SYMBOL_SOURCE: String = "HGNC", HGNC_ID: String = "HGNC:14825", CANONICAL: String = "YES", RefSeq: String = ..., HGVS_OFFSET: Option[String] = None, HGVSg: String = "chr1:g.69897T>C", CLIN_SIG: Option[String] = None, SOMATIC: Option[String] = None, PHENO: Option[String] = None, PUBMED: Option[String] = Some("29135816"), CADD_raw_rankscore: Option[String] = None, DANN_rankscore: Option[String] = None, Ensembl_geneid: Option[String] = None, Ensembl_transcriptid: Option[String] = None, ExAC_AC: Option[String] = None, ExAC_AF: Option[String] = None, FATHMM_converted_rankscore: Option[String] = None, FATHMM_pred: Option[String] = None, GTEx_V7_tissue: Option[String] = None, Interpro_domain: Option[String] = None, LRT_converted_rankscore: Option[String] = None, LRT_pred: Option[String] = None, Polyphen2_HVAR_pred: Option[String] = None, Polyphen2_HVAR_rankscore: Option[String] = None, REVEL_rankscore: Option[String] = None, SIFT_converted_rankscore: Option[String] = None, SIFT_pred: Option[String] = None, UK10K_AC: Option[String] = None, UK10K_AF: Option[String] = None, clinvar_MedGen_id: Option[String] = None, clinvar_OMIM_id: Option[String] = None, clinvar_Orphanet_id: Option[String] = None, clinvar_clnsig: Option[String] = None, clinvar_id: Option[String] = None, clinvar_trait: Option[String] = None, gnomAD_exomes_AC: Option[String] = None, gnomAD_exomes_AF: Option[String] = None, gnomAD_genomes_AC: Option[String] = None, gnomAD_genomes_AF: Option[String] = None, phyloP17way_primate_rankscore: Option[String] = None, rs_dbSNP151: Option[String] = None)

Value Members

  1. final def !=(arg0: Any): Boolean
    Definition Classes
    AnyRef → Any
  2. final def ##(): Int
    Definition Classes
    AnyRef → Any
  3. final def ==(arg0: Any): Boolean
    Definition Classes
    AnyRef → Any
  4. val Allele: String
  5. val Amino_acids: AminoAcids
  6. val BIOTYPE: String
  7. val CADD_raw_rankscore: Option[String]
  8. val CANONICAL: String
  9. val CDS_position: Int
  10. val CLIN_SIG: Option[String]
  11. val Codons: CODONS
  12. val Consequence: List[String]
  13. val DANN_rankscore: Option[String]
  14. val DISTANCE: Option[Int]
  15. val EXON: Exon
  16. val Ensembl_geneid: Option[String]
  17. val Ensembl_transcriptid: Option[String]
  18. val ExAC_AC: Option[String]
  19. val ExAC_AF: Option[String]
  20. val Existing_variation: List[String]
  21. val FATHMM_converted_rankscore: Option[String]
  22. val FATHMM_pred: Option[String]
  23. val FLAGS: Option[List[String]]
  24. val Feature: String
  25. val Feature_type: String
  26. val GTEx_V7_tissue: Option[String]
  27. val Gene: String
  28. val HGNC_ID: String
  29. val HGVS_OFFSET: Option[String]
  30. val HGVSc: String
  31. val HGVSg: String
  32. val HGVSp: String
  33. val IMPACT: String
  34. val INTRON: Intron
  35. val Interpro_domain: Option[String]
  36. val LRT_converted_rankscore: Option[String]
  37. val LRT_pred: Option[String]
  38. val PHENO: Option[String]
  39. val PICK: String
  40. val PUBMED: Option[String]
  41. val Polyphen2_HVAR_pred: Option[String]
  42. val Polyphen2_HVAR_rankscore: Option[String]
  43. val Protein_position: Int
  44. val REVEL_rankscore: Option[String]
  45. val RefSeq: String
  46. val SIFT_converted_rankscore: Option[String]
  47. val SIFT_pred: Option[String]
  48. val SOMATIC: Option[String]
  49. val STRAND: Int
  50. val SYMBOL: String
  51. val SYMBOL_SOURCE: String
  52. val UK10K_AC: Option[String]
  53. val UK10K_AF: Option[String]
  54. val VARIANT_CLASS: String
  55. final def asInstanceOf[T0]: T0
    Definition Classes
    Any
  56. val cDNA_position: Int
  57. val clinvar_MedGen_id: Option[String]
  58. val clinvar_OMIM_id: Option[String]
  59. val clinvar_Orphanet_id: Option[String]
  60. val clinvar_clnsig: Option[String]
  61. val clinvar_id: Option[String]
  62. val clinvar_trait: Option[String]
  63. def clone(): AnyRef
    Attributes
    protected[lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... ) @native() @HotSpotIntrinsicCandidate()
  64. final def eq(arg0: AnyRef): Boolean
    Definition Classes
    AnyRef
  65. final def getClass(): Class[_]
    Definition Classes
    AnyRef → Any
    Annotations
    @native() @HotSpotIntrinsicCandidate()
  66. val gnomAD_exomes_AC: Option[String]
  67. val gnomAD_exomes_AF: Option[String]
  68. val gnomAD_genomes_AC: Option[String]
  69. val gnomAD_genomes_AF: Option[String]
  70. final def isInstanceOf[T0]: Boolean
    Definition Classes
    Any
  71. final def ne(arg0: AnyRef): Boolean
    Definition Classes
    AnyRef
  72. final def notify(): Unit
    Definition Classes
    AnyRef
    Annotations
    @native() @HotSpotIntrinsicCandidate()
  73. final def notifyAll(): Unit
    Definition Classes
    AnyRef
    Annotations
    @native() @HotSpotIntrinsicCandidate()
  74. val phyloP17way_primate_rankscore: Option[String]
  75. val rs_dbSNP151: Option[String]
  76. final def synchronized[T0](arg0: ⇒ T0): T0
    Definition Classes
    AnyRef
  77. final def wait(arg0: Long, arg1: Int): Unit
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  78. final def wait(arg0: Long): Unit
    Definition Classes
    AnyRef
    Annotations
    @throws( ... ) @native()
  79. final def wait(): Unit
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

Deprecated Value Members

  1. def finalize(): Unit
    Attributes
    protected[lang]
    Definition Classes
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    @throws( classOf[java.lang.Throwable] ) @Deprecated
    Deprecated

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