Packages

case class RawAnnovarScores(#Chr: String = "1", Start: String = "69091", End: String = "69091", Ref: String = "A", Alt: String = "C", DamagePredCount: String = "1.17", SIFT_pred: String = "T", SIFT4G_pred: String = "T", Polyphen2_HDIV_pred: String = "B", Polyphen2_HVAR_pred: String = "B", LRT_pred: String = "N", MutationTaster_pred: Option[String] = None, MutationAssessor_pred: Option[String] = None, FATHMM_pred: String = "T", PROVEAN_pred: String = "N", VEST4_score: String = "0.198", MetaSVM_pred: String = "T", MetaLR_pred: String = "T", M-CAP_pred: String = "T", REVEL_score: String = "0.109", MutPred_score: String = "0.823", MVP_score: Option[String] = None, MPC_score: Option[String] = None, PrimateAI_pred: Option[String] = None, DEOGEN2_pred: String = "T", BayesDel_addAF_pred: String = "T", BayesDel_noAF_pred: String = "T", ClinPred_pred: String = "T", LIST-S2_pred: String = "D", CADD_raw: String = "-0.145", CADD_phred: String = "0.670", DANN_score: String = "0.444", fathmm-MKL_coding_pred: String = "N", fathmm-XF_coding_pred: String = "N", Eigen-raw_coding: String = "-1.394", Eigen-phred_coding: String = "0.119", Eigen-PC-raw_coding: String = "-1.536", Eigen-PC-phred_coding: String = "0.095", GenoCanyon_score: String = "0.000", integrated_fitCons_score: String = "0.487", GM12878_fitCons_score: String = "0.574", H1-hESC_fitCons_score: String = "0.574", HUVEC_fitCons_score: String = "0.564", LINSIGHT: Option[String] = None, GERP++_NR: String = "2.310", GERP++_RS: String = "-4.630", phyloP100way_vertebrate: String = "-0.055", phyloP30way_mammalian: String = "-0.214", phyloP17way_primate: String = "-2.209", phastCons100way_vertebrate: String = "0.000", phastCons30way_mammalian: String = "0.105", phastCons17way_primate: String = "0.000", bStatistic: String = "994", Interpro_domain: Option[String] = None, GTEx_V8_gene: Option[String] = None, GTEx_V8_tissue: Option[String] = None) extends Product with Serializable

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  1. RawAnnovarScores
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Instance Constructors

  1. new RawAnnovarScores(#Chr: String = "1", Start: String = "69091", End: String = "69091", Ref: String = "A", Alt: String = "C", DamagePredCount: String = "1.17", SIFT_pred: String = "T", SIFT4G_pred: String = "T", Polyphen2_HDIV_pred: String = "B", Polyphen2_HVAR_pred: String = "B", LRT_pred: String = "N", MutationTaster_pred: Option[String] = None, MutationAssessor_pred: Option[String] = None, FATHMM_pred: String = "T", PROVEAN_pred: String = "N", VEST4_score: String = "0.198", MetaSVM_pred: String = "T", MetaLR_pred: String = "T", M-CAP_pred: String = "T", REVEL_score: String = "0.109", MutPred_score: String = "0.823", MVP_score: Option[String] = None, MPC_score: Option[String] = None, PrimateAI_pred: Option[String] = None, DEOGEN2_pred: String = "T", BayesDel_addAF_pred: String = "T", BayesDel_noAF_pred: String = "T", ClinPred_pred: String = "T", LIST-S2_pred: String = "D", CADD_raw: String = "-0.145", CADD_phred: String = "0.670", DANN_score: String = "0.444", fathmm-MKL_coding_pred: String = "N", fathmm-XF_coding_pred: String = "N", Eigen-raw_coding: String = "-1.394", Eigen-phred_coding: String = "0.119", Eigen-PC-raw_coding: String = "-1.536", Eigen-PC-phred_coding: String = "0.095", GenoCanyon_score: String = "0.000", integrated_fitCons_score: String = "0.487", GM12878_fitCons_score: String = "0.574", H1-hESC_fitCons_score: String = "0.574", HUVEC_fitCons_score: String = "0.564", LINSIGHT: Option[String] = None, GERP++_NR: String = "2.310", GERP++_RS: String = "-4.630", phyloP100way_vertebrate: String = "-0.055", phyloP30way_mammalian: String = "-0.214", phyloP17way_primate: String = "-2.209", phastCons100way_vertebrate: String = "0.000", phastCons30way_mammalian: String = "0.105", phastCons17way_primate: String = "0.000", bStatistic: String = "994", Interpro_domain: Option[String] = None, GTEx_V8_gene: Option[String] = None, GTEx_V8_tissue: Option[String] = None)

Value Members

  1. final def !=(arg0: Any): Boolean
    Definition Classes
    AnyRef → Any
  2. final def ##(): Int
    Definition Classes
    AnyRef → Any
  3. val #Chr: String
  4. final def ==(arg0: Any): Boolean
    Definition Classes
    AnyRef → Any
  5. val Alt: String
  6. val BayesDel_addAF_pred: String
  7. val BayesDel_noAF_pred: String
  8. val CADD_phred: String
  9. val CADD_raw: String
  10. val ClinPred_pred: String
  11. val DANN_score: String
  12. val DEOGEN2_pred: String
  13. val DamagePredCount: String
  14. val Eigen-PC-phred_coding: String
  15. val Eigen-PC-raw_coding: String
  16. val Eigen-phred_coding: String
  17. val Eigen-raw_coding: String
  18. val End: String
  19. val FATHMM_pred: String
  20. val GERP++_NR: String
  21. val GERP++_RS: String
  22. val GM12878_fitCons_score: String
  23. val GTEx_V8_gene: Option[String]
  24. val GTEx_V8_tissue: Option[String]
  25. val GenoCanyon_score: String
  26. val H1-hESC_fitCons_score: String
  27. val HUVEC_fitCons_score: String
  28. val Interpro_domain: Option[String]
  29. val LINSIGHT: Option[String]
  30. val LIST-S2_pred: String
  31. val LRT_pred: String
  32. val M-CAP_pred: String
  33. val MPC_score: Option[String]
  34. val MVP_score: Option[String]
  35. val MetaLR_pred: String
  36. val MetaSVM_pred: String
  37. val MutPred_score: String
  38. val MutationAssessor_pred: Option[String]
  39. val MutationTaster_pred: Option[String]
  40. val PROVEAN_pred: String
  41. val Polyphen2_HDIV_pred: String
  42. val Polyphen2_HVAR_pred: String
  43. val PrimateAI_pred: Option[String]
  44. val REVEL_score: String
  45. val Ref: String
  46. val SIFT4G_pred: String
  47. val SIFT_pred: String
  48. val Start: String
  49. val VEST4_score: String
  50. final def asInstanceOf[T0]: T0
    Definition Classes
    Any
  51. val bStatistic: String
  52. def clone(): AnyRef
    Attributes
    protected[lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... ) @native() @HotSpotIntrinsicCandidate()
  53. final def eq(arg0: AnyRef): Boolean
    Definition Classes
    AnyRef
  54. val fathmm-MKL_coding_pred: String
  55. val fathmm-XF_coding_pred: String
  56. final def getClass(): Class[_]
    Definition Classes
    AnyRef → Any
    Annotations
    @native() @HotSpotIntrinsicCandidate()
  57. val integrated_fitCons_score: String
  58. final def isInstanceOf[T0]: Boolean
    Definition Classes
    Any
  59. final def ne(arg0: AnyRef): Boolean
    Definition Classes
    AnyRef
  60. final def notify(): Unit
    Definition Classes
    AnyRef
    Annotations
    @native() @HotSpotIntrinsicCandidate()
  61. final def notifyAll(): Unit
    Definition Classes
    AnyRef
    Annotations
    @native() @HotSpotIntrinsicCandidate()
  62. val phastCons100way_vertebrate: String
  63. val phastCons17way_primate: String
  64. val phastCons30way_mammalian: String
  65. val phyloP100way_vertebrate: String
  66. val phyloP17way_primate: String
  67. val phyloP30way_mammalian: String
  68. final def synchronized[T0](arg0: ⇒ T0): T0
    Definition Classes
    AnyRef
  69. final def wait(arg0: Long, arg1: Int): Unit
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  70. final def wait(arg0: Long): Unit
    Definition Classes
    AnyRef
    Annotations
    @throws( ... ) @native()
  71. final def wait(): Unit
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

Deprecated Value Members

  1. def finalize(): Unit
    Attributes
    protected[lang]
    Definition Classes
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    @throws( classOf[java.lang.Throwable] ) @Deprecated
    Deprecated

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