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case class RawClinvar(contigName: String = "2", start: Long = 69359260, end: Long = 69359261, names: List[String] = List("257668"), referenceAllele: String = "T", alternateAlleles: List[String] = List("A"), qual: Option[Double] = None, filters: List[String] = List(""), splitFromMultiAllelic: Boolean = false, INFO_AF_EXAC: Double = 0.00394, INFO_CLNVCSO: String = "SO:0001483", INFO_GENEINFO: String = "GFPT1:2673", INFO_CLNSIGINCL: Option[List[String]] = None, INFO_CLNVI: List[String] = ..., INFO_CLNDISDB: List[String] = ..., INFO_CLNREVSTAT: List[String] = ..., INFO_CLNDN: List[String] = ..., INFO_ALLELEID: Int = 250763, INFO_ORIGIN: List[String] = List("1"), INFO_SSR: Option[Int] = None, INFO_CLNDNINCL: Option[List[String]] = None, INFO_CLNSIG: List[String] = List("Benign"), INFO_RS: List[String] = List("112682152"), INFO_DBVARID: Option[List[String]] = None, INFO_AF_TGP: Double = 0.01118, INFO_CLNVC: String = "single_nucleotide_variant", INFO_CLNHGVS: List[String] = List("NC_000002.12:g.69359261T>A"), INFO_MC: List[String] = List("SO:0001627|intron_variant"), INFO_CLNSIGCONF: Option[List[String]] = None, INFO_AF_ESP: Double = 0.01415, INFO_CLNDISDBINCL: Option[List[String]] = None, genotypes: List[GENOTYPES] = List(GENOTYPES())) extends Product with Serializable

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  1. RawClinvar
  2. Serializable
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Instance Constructors

  1. new RawClinvar(contigName: String = "2", start: Long = 69359260, end: Long = 69359261, names: List[String] = List("257668"), referenceAllele: String = "T", alternateAlleles: List[String] = List("A"), qual: Option[Double] = None, filters: List[String] = List(""), splitFromMultiAllelic: Boolean = false, INFO_AF_EXAC: Double = 0.00394, INFO_CLNVCSO: String = "SO:0001483", INFO_GENEINFO: String = "GFPT1:2673", INFO_CLNSIGINCL: Option[List[String]] = None, INFO_CLNVI: List[String] = ..., INFO_CLNDISDB: List[String] = ..., INFO_CLNREVSTAT: List[String] = ..., INFO_CLNDN: List[String] = ..., INFO_ALLELEID: Int = 250763, INFO_ORIGIN: List[String] = List("1"), INFO_SSR: Option[Int] = None, INFO_CLNDNINCL: Option[List[String]] = None, INFO_CLNSIG: List[String] = List("Benign"), INFO_RS: List[String] = List("112682152"), INFO_DBVARID: Option[List[String]] = None, INFO_AF_TGP: Double = 0.01118, INFO_CLNVC: String = "single_nucleotide_variant", INFO_CLNHGVS: List[String] = List("NC_000002.12:g.69359261T>A"), INFO_MC: List[String] = List("SO:0001627|intron_variant"), INFO_CLNSIGCONF: Option[List[String]] = None, INFO_AF_ESP: Double = 0.01415, INFO_CLNDISDBINCL: Option[List[String]] = None, genotypes: List[GENOTYPES] = List(GENOTYPES()))

Value Members

  1. final def !=(arg0: Any): Boolean
    Definition Classes
    AnyRef → Any
  2. final def ##(): Int
    Definition Classes
    AnyRef → Any
  3. final def ==(arg0: Any): Boolean
    Definition Classes
    AnyRef → Any
  4. val INFO_AF_ESP: Double
  5. val INFO_AF_EXAC: Double
  6. val INFO_AF_TGP: Double
  7. val INFO_ALLELEID: Int
  8. val INFO_CLNDISDB: List[String]
  9. val INFO_CLNDISDBINCL: Option[List[String]]
  10. val INFO_CLNDN: List[String]
  11. val INFO_CLNDNINCL: Option[List[String]]
  12. val INFO_CLNHGVS: List[String]
  13. val INFO_CLNREVSTAT: List[String]
  14. val INFO_CLNSIG: List[String]
  15. val INFO_CLNSIGCONF: Option[List[String]]
  16. val INFO_CLNSIGINCL: Option[List[String]]
  17. val INFO_CLNVC: String
  18. val INFO_CLNVCSO: String
  19. val INFO_CLNVI: List[String]
  20. val INFO_DBVARID: Option[List[String]]
  21. val INFO_GENEINFO: String
  22. val INFO_MC: List[String]
  23. val INFO_ORIGIN: List[String]
  24. val INFO_RS: List[String]
  25. val INFO_SSR: Option[Int]
  26. val alternateAlleles: List[String]
  27. final def asInstanceOf[T0]: T0
    Definition Classes
    Any
  28. def clone(): AnyRef
    Attributes
    protected[lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... ) @native() @HotSpotIntrinsicCandidate()
  29. val contigName: String
  30. val end: Long
  31. final def eq(arg0: AnyRef): Boolean
    Definition Classes
    AnyRef
  32. val filters: List[String]
  33. val genotypes: List[GENOTYPES]
  34. final def getClass(): Class[_]
    Definition Classes
    AnyRef → Any
    Annotations
    @native() @HotSpotIntrinsicCandidate()
  35. final def isInstanceOf[T0]: Boolean
    Definition Classes
    Any
  36. val names: List[String]
  37. final def ne(arg0: AnyRef): Boolean
    Definition Classes
    AnyRef
  38. final def notify(): Unit
    Definition Classes
    AnyRef
    Annotations
    @native() @HotSpotIntrinsicCandidate()
  39. final def notifyAll(): Unit
    Definition Classes
    AnyRef
    Annotations
    @native() @HotSpotIntrinsicCandidate()
  40. val qual: Option[Double]
  41. val referenceAllele: String
  42. val splitFromMultiAllelic: Boolean
  43. val start: Long
  44. final def synchronized[T0](arg0: ⇒ T0): T0
    Definition Classes
    AnyRef
  45. final def wait(arg0: Long, arg1: Int): Unit
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  46. final def wait(arg0: Long): Unit
    Definition Classes
    AnyRef
    Annotations
    @throws( ... ) @native()
  47. final def wait(): Unit
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

Deprecated Value Members

  1. def finalize(): Unit
    Attributes
    protected[lang]
    Definition Classes
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    @throws( classOf[java.lang.Throwable] ) @Deprecated
    Deprecated

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