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bio.ferlab.datalake.testutils.models.raw

RawGnomadConstraint

case class RawGnomadConstraint(gene: String = "ZC3H4", transcript: String = "ENST00000253048", obs_mis: String = "746", exp_mis: String = "7.9816e+02", oe_mis: String = "9.3465e-01", mu_mis: String = "5.4158e-05", possible_mis: String = "8378", obs_mis_pphen: String = "95", exp_mis_pphen: String = "1.1573e+02", oe_mis_pphen: String = "8.2090e-01", possible_mis_pphen: String = "1145", obs_syn: String = "446", exp_syn: String = "3.4301e+02", oe_syn: String = "1.3002e+00", mu_syn: String = "2.5301e-05", possible_syn: String = "2661", obs_lof: String = "0", mu_lof: String = "3.7692e-06", possible_lof: String = "543", exp_lof: String = "5.4645e+01", pLI: String = "1.0000e+00", pNull: String = "1.8815e-22", pRec: String = "2.3777e-09", oe_lof: String = "0.0000e+00", oe_syn_lower: String = "1.2020e+00", oe_syn_upper: String = "1.4060e+00", oe_mis_lower: String = "8.7900e-01", oe_mis_upper: String = "9.9300e-01", oe_lof_lower: String = "0.0000e+00", oe_lof_upper: String = "5.4000e-02", constraint_flag: String = "syn_outlier", syn_z: String = "-4.3711e+00", mis_z: String = "6.5604e-01", lof_z: String = "6.8501e+00", oe_lof_upper_rank: String = "22", oe_lof_upper_bin: String = "0", oe_lof_upper_bin_6: String = "0", n_sites: String = "10", classic_caf: String = "4.7040e-05", max_af: String = "9.8703e-06", no_lofs: String = "124783", obs_het_lof: String = "7", obs_hom_lof: String = "0", defined: String = "124790", p: String = "2.8048e-05", exp_hom_lof: String = "9.8168e-05", classic_caf_afr: String = "8.5353e-05", classic_caf_amr: String = "3.4858e-05", classic_caf_asj: String = "0.0000e+00", classic_caf_eas: String = "0.0000e+00", classic_caf_fin: String = "0.0000e+00", classic_caf_nfe: String = "6.3937e-05", classic_caf_oth: String = "0.0000e+00", classic_caf_sas: String = "6.6100e-05", p_afr: String = "6.4560e-05", p_amr: String = "2.8964e-05", p_asj: String = "0.0000e+00", p_eas: String = "0.0000e+00", p_fin: String = "0.0000e+00", p_nfe: String = "3.5310e-05", p_oth: String = "0.0000e+00", p_sas: String = "3.2678e-05", transcript_type: String = "protein_coding", gene_id: String = "ENSG00000130749", transcript_level: String = "2", cds_length: String = "3909", num_coding_exons: String = "14", gene_type: String = "protein_coding", gene_length: String = "49566", exac_pLI: String = "1.0000e+00", exac_obs_lof: String = "0", exac_exp_lof: String = "4.2170e+01", exac_oe_lof: String = "0.0000e+00", brain_expression: String = "NA", chromosome: String = "19", start_position: String = "47567444", end_position: String = "47617009") extends Product with Serializable

Linear Supertypes
Serializable, Serializable, Product, Equals, AnyRef, Any
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Inherited
  1. RawGnomadConstraint
  2. Serializable
  3. Serializable
  4. Product
  5. Equals
  6. AnyRef
  7. Any
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Visibility
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Instance Constructors

  1. new RawGnomadConstraint(gene: String = "ZC3H4", transcript: String = "ENST00000253048", obs_mis: String = "746", exp_mis: String = "7.9816e+02", oe_mis: String = "9.3465e-01", mu_mis: String = "5.4158e-05", possible_mis: String = "8378", obs_mis_pphen: String = "95", exp_mis_pphen: String = "1.1573e+02", oe_mis_pphen: String = "8.2090e-01", possible_mis_pphen: String = "1145", obs_syn: String = "446", exp_syn: String = "3.4301e+02", oe_syn: String = "1.3002e+00", mu_syn: String = "2.5301e-05", possible_syn: String = "2661", obs_lof: String = "0", mu_lof: String = "3.7692e-06", possible_lof: String = "543", exp_lof: String = "5.4645e+01", pLI: String = "1.0000e+00", pNull: String = "1.8815e-22", pRec: String = "2.3777e-09", oe_lof: String = "0.0000e+00", oe_syn_lower: String = "1.2020e+00", oe_syn_upper: String = "1.4060e+00", oe_mis_lower: String = "8.7900e-01", oe_mis_upper: String = "9.9300e-01", oe_lof_lower: String = "0.0000e+00", oe_lof_upper: String = "5.4000e-02", constraint_flag: String = "syn_outlier", syn_z: String = "-4.3711e+00", mis_z: String = "6.5604e-01", lof_z: String = "6.8501e+00", oe_lof_upper_rank: String = "22", oe_lof_upper_bin: String = "0", oe_lof_upper_bin_6: String = "0", n_sites: String = "10", classic_caf: String = "4.7040e-05", max_af: String = "9.8703e-06", no_lofs: String = "124783", obs_het_lof: String = "7", obs_hom_lof: String = "0", defined: String = "124790", p: String = "2.8048e-05", exp_hom_lof: String = "9.8168e-05", classic_caf_afr: String = "8.5353e-05", classic_caf_amr: String = "3.4858e-05", classic_caf_asj: String = "0.0000e+00", classic_caf_eas: String = "0.0000e+00", classic_caf_fin: String = "0.0000e+00", classic_caf_nfe: String = "6.3937e-05", classic_caf_oth: String = "0.0000e+00", classic_caf_sas: String = "6.6100e-05", p_afr: String = "6.4560e-05", p_amr: String = "2.8964e-05", p_asj: String = "0.0000e+00", p_eas: String = "0.0000e+00", p_fin: String = "0.0000e+00", p_nfe: String = "3.5310e-05", p_oth: String = "0.0000e+00", p_sas: String = "3.2678e-05", transcript_type: String = "protein_coding", gene_id: String = "ENSG00000130749", transcript_level: String = "2", cds_length: String = "3909", num_coding_exons: String = "14", gene_type: String = "protein_coding", gene_length: String = "49566", exac_pLI: String = "1.0000e+00", exac_obs_lof: String = "0", exac_exp_lof: String = "4.2170e+01", exac_oe_lof: String = "0.0000e+00", brain_expression: String = "NA", chromosome: String = "19", start_position: String = "47567444", end_position: String = "47617009")

Value Members

  1. final def !=(arg0: Any): Boolean
    Definition Classes
    AnyRef → Any
  2. final def ##(): Int
    Definition Classes
    AnyRef → Any
  3. final def ==(arg0: Any): Boolean
    Definition Classes
    AnyRef → Any
  4. final def asInstanceOf[T0]: T0
    Definition Classes
    Any
  5. val brain_expression: String
  6. val cds_length: String
  7. val chromosome: String
  8. val classic_caf: String
  9. val classic_caf_afr: String
  10. val classic_caf_amr: String
  11. val classic_caf_asj: String
  12. val classic_caf_eas: String
  13. val classic_caf_fin: String
  14. val classic_caf_nfe: String
  15. val classic_caf_oth: String
  16. val classic_caf_sas: String
  17. def clone(): AnyRef
    Attributes
    protected[lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... ) @native() @HotSpotIntrinsicCandidate()
  18. val constraint_flag: String
  19. val defined: String
  20. val end_position: String
  21. final def eq(arg0: AnyRef): Boolean
    Definition Classes
    AnyRef
  22. val exac_exp_lof: String
  23. val exac_obs_lof: String
  24. val exac_oe_lof: String
  25. val exac_pLI: String
  26. val exp_hom_lof: String
  27. val exp_lof: String
  28. val exp_mis: String
  29. val exp_mis_pphen: String
  30. val exp_syn: String
  31. val gene: String
  32. val gene_id: String
  33. val gene_length: String
  34. val gene_type: String
  35. final def getClass(): Class[_]
    Definition Classes
    AnyRef → Any
    Annotations
    @native() @HotSpotIntrinsicCandidate()
  36. final def isInstanceOf[T0]: Boolean
    Definition Classes
    Any
  37. val lof_z: String
  38. val max_af: String
  39. val mis_z: String
  40. val mu_lof: String
  41. val mu_mis: String
  42. val mu_syn: String
  43. val n_sites: String
  44. final def ne(arg0: AnyRef): Boolean
    Definition Classes
    AnyRef
  45. val no_lofs: String
  46. final def notify(): Unit
    Definition Classes
    AnyRef
    Annotations
    @native() @HotSpotIntrinsicCandidate()
  47. final def notifyAll(): Unit
    Definition Classes
    AnyRef
    Annotations
    @native() @HotSpotIntrinsicCandidate()
  48. val num_coding_exons: String
  49. val obs_het_lof: String
  50. val obs_hom_lof: String
  51. val obs_lof: String
  52. val obs_mis: String
  53. val obs_mis_pphen: String
  54. val obs_syn: String
  55. val oe_lof: String
  56. val oe_lof_lower: String
  57. val oe_lof_upper: String
  58. val oe_lof_upper_bin: String
  59. val oe_lof_upper_bin_6: String
  60. val oe_lof_upper_rank: String
  61. val oe_mis: String
  62. val oe_mis_lower: String
  63. val oe_mis_pphen: String
  64. val oe_mis_upper: String
  65. val oe_syn: String
  66. val oe_syn_lower: String
  67. val oe_syn_upper: String
  68. val p: String
  69. val pLI: String
  70. val pNull: String
  71. val pRec: String
  72. val p_afr: String
  73. val p_amr: String
  74. val p_asj: String
  75. val p_eas: String
  76. val p_fin: String
  77. val p_nfe: String
  78. val p_oth: String
  79. val p_sas: String
  80. val possible_lof: String
  81. val possible_mis: String
  82. val possible_mis_pphen: String
  83. val possible_syn: String
  84. val start_position: String
  85. val syn_z: String
  86. final def synchronized[T0](arg0: ⇒ T0): T0
    Definition Classes
    AnyRef
  87. val transcript: String
  88. val transcript_level: String
  89. val transcript_type: String
  90. final def wait(arg0: Long, arg1: Int): Unit
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  91. final def wait(arg0: Long): Unit
    Definition Classes
    AnyRef
    Annotations
    @throws( ... ) @native()
  92. final def wait(): Unit
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

Deprecated Value Members

  1. def finalize(): Unit
    Attributes
    protected[lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] ) @Deprecated
    Deprecated

Inherited from Serializable

Inherited from Serializable

Inherited from Product

Inherited from Equals

Inherited from AnyRef

Inherited from Any

Ungrouped