Packages

case class RawVcf(contigName: String = "chr1", start: Long = 69896, end: Long = 69897, names: List[String] = List("rs200676709"), referenceAllele: String = "T", alternateAlleles: List[String] = List("C"), qual: Double = 2324.17, splitFromMultiAllelic: Boolean = false, INFO_FILTERS: List[String] = List("PASS"), INFO_AC: List[Int] = List(59), INFO_SOR: Double = 0.005, INFO_ReadPosRankSum: Double = 0.736, INFO_AN: Int = 88, INFO_AF: List[Double] = List(0.67), INFO_FS: Double = 57.081, INFO_LOD: Option[Double] = None, INFO_DP: Int = 330, INFO_MQ: Double = 15.54, INFO_QD: Double = 8.07, INFO_END: Option[Int] = None, INFO_CSQ: List[InfoCSQ] = List(InfoCSQ()), INFO_DB: Boolean = true, INFO_MQRankSum: Double = 2.054, INFO_OLD_MULTIALLELIC: Option[String] = None, genotypes: List[SNV_GENOTYPES] = ...) extends Product with Serializable

Linear Supertypes
Serializable, Serializable, Product, Equals, AnyRef, Any
Ordering
  1. Alphabetic
  2. By Inheritance
Inherited
  1. RawVcf
  2. Serializable
  3. Serializable
  4. Product
  5. Equals
  6. AnyRef
  7. Any
  1. Hide All
  2. Show All
Visibility
  1. Public
  2. All

Instance Constructors

  1. new RawVcf(contigName: String = "chr1", start: Long = 69896, end: Long = 69897, names: List[String] = List("rs200676709"), referenceAllele: String = "T", alternateAlleles: List[String] = List("C"), qual: Double = 2324.17, splitFromMultiAllelic: Boolean = false, INFO_FILTERS: List[String] = List("PASS"), INFO_AC: List[Int] = List(59), INFO_SOR: Double = 0.005, INFO_ReadPosRankSum: Double = 0.736, INFO_AN: Int = 88, INFO_AF: List[Double] = List(0.67), INFO_FS: Double = 57.081, INFO_LOD: Option[Double] = None, INFO_DP: Int = 330, INFO_MQ: Double = 15.54, INFO_QD: Double = 8.07, INFO_END: Option[Int] = None, INFO_CSQ: List[InfoCSQ] = List(InfoCSQ()), INFO_DB: Boolean = true, INFO_MQRankSum: Double = 2.054, INFO_OLD_MULTIALLELIC: Option[String] = None, genotypes: List[SNV_GENOTYPES] = ...)

Value Members

  1. final def !=(arg0: Any): Boolean
    Definition Classes
    AnyRef → Any
  2. final def ##(): Int
    Definition Classes
    AnyRef → Any
  3. final def ==(arg0: Any): Boolean
    Definition Classes
    AnyRef → Any
  4. val INFO_AC: List[Int]
  5. val INFO_AF: List[Double]
  6. val INFO_AN: Int
  7. val INFO_CSQ: List[InfoCSQ]
  8. val INFO_DB: Boolean
  9. val INFO_DP: Int
  10. val INFO_END: Option[Int]
  11. val INFO_FILTERS: List[String]
  12. val INFO_FS: Double
  13. val INFO_LOD: Option[Double]
  14. val INFO_MQ: Double
  15. val INFO_MQRankSum: Double
  16. val INFO_OLD_MULTIALLELIC: Option[String]
  17. val INFO_QD: Double
  18. val INFO_ReadPosRankSum: Double
  19. val INFO_SOR: Double
  20. val alternateAlleles: List[String]
  21. final def asInstanceOf[T0]: T0
    Definition Classes
    Any
  22. def clone(): AnyRef
    Attributes
    protected[lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... ) @native() @HotSpotIntrinsicCandidate()
  23. val contigName: String
  24. val end: Long
  25. final def eq(arg0: AnyRef): Boolean
    Definition Classes
    AnyRef
  26. val genotypes: List[SNV_GENOTYPES]
  27. final def getClass(): Class[_]
    Definition Classes
    AnyRef → Any
    Annotations
    @native() @HotSpotIntrinsicCandidate()
  28. final def isInstanceOf[T0]: Boolean
    Definition Classes
    Any
  29. val names: List[String]
  30. final def ne(arg0: AnyRef): Boolean
    Definition Classes
    AnyRef
  31. final def notify(): Unit
    Definition Classes
    AnyRef
    Annotations
    @native() @HotSpotIntrinsicCandidate()
  32. final def notifyAll(): Unit
    Definition Classes
    AnyRef
    Annotations
    @native() @HotSpotIntrinsicCandidate()
  33. val qual: Double
  34. val referenceAllele: String
  35. val splitFromMultiAllelic: Boolean
  36. val start: Long
  37. final def synchronized[T0](arg0: ⇒ T0): T0
    Definition Classes
    AnyRef
  38. final def wait(arg0: Long, arg1: Int): Unit
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  39. final def wait(arg0: Long): Unit
    Definition Classes
    AnyRef
    Annotations
    @throws( ... ) @native()
  40. final def wait(): Unit
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

Deprecated Value Members

  1. def finalize(): Unit
    Attributes
    protected[lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] ) @Deprecated
    Deprecated

Inherited from Serializable

Inherited from Serializable

Inherited from Product

Inherited from Equals

Inherited from AnyRef

Inherited from Any

Ungrouped