Packages

case class RawVcfWithInfoAnn(contigName: String = "chr1", start: Long = 69896, end: Long = 69897, names: List[String] = List("rs200676709"), referenceAllele: String = "T", alternateAlleles: List[String] = List("C"), qual: Double = 2324.17, splitFromMultiAllelic: Boolean = false, INFO_FILTERS: List[String] = List("PASS"), INFO_AC: List[Int] = List(59), INFO_SOR: Double = 0.005, INFO_ReadPosRankSum: Double = 0.736, INFO_AN: Int = 88, INFO_AF: List[Double] = List(0.67), INFO_FS: Double = 57.081, INFO_LOD: Option[Double] = None, INFO_DP: Int = 330, INFO_MQ: Double = 15.54, INFO_QD: Double = 8.07, INFO_END: Option[Int] = None, INFO_ANN: List[InfoCSQ] = List(InfoCSQ()), INFO_DB: Boolean = true, INFO_MQRankSum: Double = 2.054, INFO_OLD_MULTIALLELIC: Option[String] = None, genotypes: List[SNV_GENOTYPES] = ...) extends Product with Serializable

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Serializable, Serializable, Product, Equals, AnyRef, Any
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  1. RawVcfWithInfoAnn
  2. Serializable
  3. Serializable
  4. Product
  5. Equals
  6. AnyRef
  7. Any
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Instance Constructors

  1. new RawVcfWithInfoAnn(contigName: String = "chr1", start: Long = 69896, end: Long = 69897, names: List[String] = List("rs200676709"), referenceAllele: String = "T", alternateAlleles: List[String] = List("C"), qual: Double = 2324.17, splitFromMultiAllelic: Boolean = false, INFO_FILTERS: List[String] = List("PASS"), INFO_AC: List[Int] = List(59), INFO_SOR: Double = 0.005, INFO_ReadPosRankSum: Double = 0.736, INFO_AN: Int = 88, INFO_AF: List[Double] = List(0.67), INFO_FS: Double = 57.081, INFO_LOD: Option[Double] = None, INFO_DP: Int = 330, INFO_MQ: Double = 15.54, INFO_QD: Double = 8.07, INFO_END: Option[Int] = None, INFO_ANN: List[InfoCSQ] = List(InfoCSQ()), INFO_DB: Boolean = true, INFO_MQRankSum: Double = 2.054, INFO_OLD_MULTIALLELIC: Option[String] = None, genotypes: List[SNV_GENOTYPES] = ...)

Value Members

  1. final def !=(arg0: Any): Boolean
    Definition Classes
    AnyRef → Any
  2. final def ##(): Int
    Definition Classes
    AnyRef → Any
  3. final def ==(arg0: Any): Boolean
    Definition Classes
    AnyRef → Any
  4. val INFO_AC: List[Int]
  5. val INFO_AF: List[Double]
  6. val INFO_AN: Int
  7. val INFO_ANN: List[InfoCSQ]
  8. val INFO_DB: Boolean
  9. val INFO_DP: Int
  10. val INFO_END: Option[Int]
  11. val INFO_FILTERS: List[String]
  12. val INFO_FS: Double
  13. val INFO_LOD: Option[Double]
  14. val INFO_MQ: Double
  15. val INFO_MQRankSum: Double
  16. val INFO_OLD_MULTIALLELIC: Option[String]
  17. val INFO_QD: Double
  18. val INFO_ReadPosRankSum: Double
  19. val INFO_SOR: Double
  20. val alternateAlleles: List[String]
  21. final def asInstanceOf[T0]: T0
    Definition Classes
    Any
  22. def clone(): AnyRef
    Attributes
    protected[lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... ) @native() @HotSpotIntrinsicCandidate()
  23. val contigName: String
  24. val end: Long
  25. final def eq(arg0: AnyRef): Boolean
    Definition Classes
    AnyRef
  26. val genotypes: List[SNV_GENOTYPES]
  27. final def getClass(): Class[_]
    Definition Classes
    AnyRef → Any
    Annotations
    @native() @HotSpotIntrinsicCandidate()
  28. final def isInstanceOf[T0]: Boolean
    Definition Classes
    Any
  29. val names: List[String]
  30. final def ne(arg0: AnyRef): Boolean
    Definition Classes
    AnyRef
  31. final def notify(): Unit
    Definition Classes
    AnyRef
    Annotations
    @native() @HotSpotIntrinsicCandidate()
  32. final def notifyAll(): Unit
    Definition Classes
    AnyRef
    Annotations
    @native() @HotSpotIntrinsicCandidate()
  33. val qual: Double
  34. val referenceAllele: String
  35. val splitFromMultiAllelic: Boolean
  36. val start: Long
  37. final def synchronized[T0](arg0: ⇒ T0): T0
    Definition Classes
    AnyRef
  38. final def wait(arg0: Long, arg1: Int): Unit
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  39. final def wait(arg0: Long): Unit
    Definition Classes
    AnyRef
    Annotations
    @throws( ... ) @native()
  40. final def wait(): Unit
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

Deprecated Value Members

  1. def finalize(): Unit
    Attributes
    protected[lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] ) @Deprecated
    Deprecated

Inherited from Serializable

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Inherited from AnyRef

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