Packages

case class SNV_GENOTYPES(sampleId: String = "11111", conditionalQuality: Int = 30, F1R2: List[Int] = List(0, 0), PRI: Option[List[Double]] = None, filters: List[String] = List("PASS"), posteriorProbabilities: List[Double] = List(7.795, 3.805, 3.795), SB: Option[List[Int]] = None, F2R1: List[Int] = List(0, 1), alleleDepths: List[Int] = List(0, 30), ICNT: Option[List[Int]] = None, AF: List[Double] = List(1.0), phased: Boolean = false, calls: List[Int] = List(0, 1), MIN_DP: Option[Int] = None, phredLikelihoods: List[Int] = List(42, 3, 0), LOD: Option[Double] = None, depth: Int = 1, SPL: Option[List[Int]] = None, PS: Option[Int] = None, MB: Option[List[Int]] = None) extends Product with Serializable

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  1. SNV_GENOTYPES
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Instance Constructors

  1. new SNV_GENOTYPES(sampleId: String = "11111", conditionalQuality: Int = 30, F1R2: List[Int] = List(0, 0), PRI: Option[List[Double]] = None, filters: List[String] = List("PASS"), posteriorProbabilities: List[Double] = List(7.795, 3.805, 3.795), SB: Option[List[Int]] = None, F2R1: List[Int] = List(0, 1), alleleDepths: List[Int] = List(0, 30), ICNT: Option[List[Int]] = None, AF: List[Double] = List(1.0), phased: Boolean = false, calls: List[Int] = List(0, 1), MIN_DP: Option[Int] = None, phredLikelihoods: List[Int] = List(42, 3, 0), LOD: Option[Double] = None, depth: Int = 1, SPL: Option[List[Int]] = None, PS: Option[Int] = None, MB: Option[List[Int]] = None)

Value Members

  1. final def !=(arg0: Any): Boolean
    Definition Classes
    AnyRef → Any
  2. final def ##(): Int
    Definition Classes
    AnyRef → Any
  3. final def ==(arg0: Any): Boolean
    Definition Classes
    AnyRef → Any
  4. val AF: List[Double]
  5. val F1R2: List[Int]
  6. val F2R1: List[Int]
  7. val ICNT: Option[List[Int]]
  8. val LOD: Option[Double]
  9. val MB: Option[List[Int]]
  10. val MIN_DP: Option[Int]
  11. val PRI: Option[List[Double]]
  12. val PS: Option[Int]
  13. val SB: Option[List[Int]]
  14. val SPL: Option[List[Int]]
  15. val alleleDepths: List[Int]
  16. final def asInstanceOf[T0]: T0
    Definition Classes
    Any
  17. val calls: List[Int]
  18. def clone(): AnyRef
    Attributes
    protected[lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... ) @native() @HotSpotIntrinsicCandidate()
  19. val conditionalQuality: Int
  20. val depth: Int
  21. final def eq(arg0: AnyRef): Boolean
    Definition Classes
    AnyRef
  22. val filters: List[String]
  23. final def getClass(): Class[_]
    Definition Classes
    AnyRef → Any
    Annotations
    @native() @HotSpotIntrinsicCandidate()
  24. final def isInstanceOf[T0]: Boolean
    Definition Classes
    Any
  25. final def ne(arg0: AnyRef): Boolean
    Definition Classes
    AnyRef
  26. final def notify(): Unit
    Definition Classes
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    @native() @HotSpotIntrinsicCandidate()
  27. final def notifyAll(): Unit
    Definition Classes
    AnyRef
    Annotations
    @native() @HotSpotIntrinsicCandidate()
  28. val phased: Boolean
  29. val phredLikelihoods: List[Int]
  30. val posteriorProbabilities: List[Double]
  31. val sampleId: String
  32. final def synchronized[T0](arg0: ⇒ T0): T0
    Definition Classes
    AnyRef
  33. final def wait(arg0: Long, arg1: Int): Unit
    Definition Classes
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    @throws( ... )
  34. final def wait(arg0: Long): Unit
    Definition Classes
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    @throws( ... ) @native()
  35. final def wait(): Unit
    Definition Classes
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    @throws( ... )

Deprecated Value Members

  1. def finalize(): Unit
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    protected[lang]
    Definition Classes
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    @throws( classOf[java.lang.Throwable] ) @Deprecated
    Deprecated

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