Value Members

1.  final def !=(arg0: Any): Boolean

   Definition Classes

   AnyRef → Any

2.  final def ##(): Int

   Definition Classes

   AnyRef → Any

3.  final def ==(arg0: Any): Boolean

   Definition Classes

   AnyRef → Any

4.  final def asInstanceOf[T0]: T0

   Definition Classes

   Any

5.  def calculateIntProbabilities(bitsPerProb: Int, probabilities: Seq[Double]): Seq[Long]

   Given a vector v = (v_1, ...

   Given a vector v = (v_1, ... v_d) of d probabilities that sum to one, we find the integer representation (where each int is stored in B bits) as follows:

   - Multiply v by 2**B-1. - Compute the total fractional part F = sum_i (v_i - floor(v_i)). - Form x by rounding the F entries of v with the largest fractional parts up to the nearest integer, and the other d-F entries down to the nearest smaller integer.

6.  def clone(): AnyRef

   Attributes

   protected[java.lang]

   Definition Classes

   AnyRef

   Annotations

   @native() @throws( ... )

7.  final def eq(arg0: AnyRef): Boolean

   Definition Classes

   AnyRef

8.  def equals(arg0: Any): Boolean

   Definition Classes

   AnyRef → Any

9.  def finalize(): Unit

   Attributes

   protected[java.lang]

   Definition Classes

   AnyRef

   Annotations

   @throws( classOf[java.lang.Throwable] )

10.  final def getClass(): Class[_]

    Definition Classes

    AnyRef → Any

    Annotations

    @native()

11.  def getProbabilityBlockSize(gc: GenotypeCharacteristics): ProbabilityBlockSize
12.  def hashCode(): Int

    Definition Classes

    AnyRef → Any

    Annotations

    @native()

13.  final def isInstanceOf[T0]: Boolean

    Definition Classes

    Any

14.  def minMax(a: Seq[Int], default: Int): (Int, Int)
15.  final def ne(arg0: AnyRef): Boolean

    Definition Classes

    AnyRef

16.  final def notify(): Unit

    Definition Classes

    AnyRef

    Annotations

    @native()

17.  final def notifyAll(): Unit

    Definition Classes

    AnyRef

    Annotations

    @native()

18.  final def synchronized[T0](arg0: ⇒ T0): T0

    Definition Classes

    AnyRef

19.  def toString(): String

    Definition Classes

    AnyRef → Any

20.  final def wait(): Unit

    Definition Classes

    AnyRef

    Annotations

    @throws( ... )

21.  final def wait(arg0: Long, arg1: Int): Unit

    Definition Classes

    AnyRef

    Annotations

    @throws( ... )

22.  final def wait(arg0: Long): Unit

    Definition Classes

    AnyRef

    Annotations

    @native() @throws( ... )

23.  def writeUTF8String(s: String, lengthAsInt: Boolean, output: DataOutput): Unit
24.  def writeUnsignedByte(l: Long, output: DataOutput): Unit
25.  def writeUnsignedInt(l: Long, output: DataOutput): Unit
26.  def writeUnsignedShort(l: Long, output: DataOutput): Unit