Packages

case class GenotypeFields(sampleId: Option[String], phased: Option[Boolean], calls: Option[Seq[Int]], depth: Option[Int], filters: Option[Seq[String]], genotypeLikelihoods: Option[Seq[Double]], phredLikelihoods: Option[Seq[Int]], posteriorProbabilities: Option[Seq[Double]], conditionalQuality: Option[Int], haplotypeQualities: Option[Seq[Int]], expectedAlleleCounts: Option[Seq[Int]], mappingQuality: Option[Int], alleleDepths: Option[Seq[Int]], otherFields: Map[String, String]) extends Product with Serializable

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Serializable, Serializable, Product, Equals, AnyRef, Any
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  1. GenotypeFields
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Instance Constructors

  1. new GenotypeFields(sampleId: Option[String], phased: Option[Boolean], calls: Option[Seq[Int]], depth: Option[Int], filters: Option[Seq[String]], genotypeLikelihoods: Option[Seq[Double]], phredLikelihoods: Option[Seq[Int]], posteriorProbabilities: Option[Seq[Double]], conditionalQuality: Option[Int], haplotypeQualities: Option[Seq[Int]], expectedAlleleCounts: Option[Seq[Int]], mappingQuality: Option[Int], alleleDepths: Option[Seq[Int]], otherFields: Map[String, String])

Value Members

  1. final def !=(arg0: Any): Boolean
    Definition Classes
    AnyRef → Any
  2. final def ##(): Int
    Definition Classes
    AnyRef → Any
  3. final def ==(arg0: Any): Boolean
    Definition Classes
    AnyRef → Any
  4. val alleleDepths: Option[Seq[Int]]
  5. final def asInstanceOf[T0]: T0
    Definition Classes
    Any
  6. val calls: Option[Seq[Int]]
  7. def clone(): AnyRef
    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @native() @throws( ... )
  8. val conditionalQuality: Option[Int]
  9. val depth: Option[Int]
  10. final def eq(arg0: AnyRef): Boolean
    Definition Classes
    AnyRef
  11. val expectedAlleleCounts: Option[Seq[Int]]
  12. val filters: Option[Seq[String]]
  13. def finalize(): Unit
    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )
  14. val genotypeLikelihoods: Option[Seq[Double]]
  15. final def getClass(): Class[_]
    Definition Classes
    AnyRef → Any
    Annotations
    @native()
  16. val haplotypeQualities: Option[Seq[Int]]
  17. final def isInstanceOf[T0]: Boolean
    Definition Classes
    Any
  18. val mappingQuality: Option[Int]
  19. final def ne(arg0: AnyRef): Boolean
    Definition Classes
    AnyRef
  20. final def notify(): Unit
    Definition Classes
    AnyRef
    Annotations
    @native()
  21. final def notifyAll(): Unit
    Definition Classes
    AnyRef
    Annotations
    @native()
  22. val otherFields: Map[String, String]
  23. val phased: Option[Boolean]
  24. val phredLikelihoods: Option[Seq[Int]]
  25. val posteriorProbabilities: Option[Seq[Double]]
  26. val sampleId: Option[String]
  27. final def synchronized[T0](arg0: ⇒ T0): T0
    Definition Classes
    AnyRef
  28. final def wait(): Unit
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  29. final def wait(arg0: Long, arg1: Int): Unit
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  30. final def wait(arg0: Long): Unit
    Definition Classes
    AnyRef
    Annotations
    @native() @throws( ... )

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Inherited from AnyRef

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