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io.projectglow.common

VariantSchemas

object VariantSchemas

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Value Members

  1. final def !=(arg0: Any): Boolean
    Definition Classes
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  2. final def ##(): Int
    Definition Classes
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  3. final def ==(arg0: Any): Boolean
    Definition Classes
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  4. val alleleDepthsField: StructField
  5. val alleleOneField: StructField
  6. val alleleTwoField: StructField
  7. val alternateAllelesField: StructField
  8. final def asInstanceOf[T0]: T0
    Definition Classes
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  9. val attributesField: StructField
  10. def bgenDefaultSchema(hasSampleIds: Boolean): StructType
  11. def bgenGenotypesField(hasSampleIds: Boolean): StructField
  12. val bimSchema: StructType
  13. val callsField: StructField
  14. def clone(): AnyRef
    Attributes
    protected[java.lang]
    Definition Classes
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    Annotations
    @native() @throws( ... )
  15. val conditionalQualityField: StructField
  16. val contigNameField: StructField
  17. val csqFieldName: String
  18. val depthField: StructField
  19. val endField: StructField
  20. final def eq(arg0: AnyRef): Boolean
    Definition Classes
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  21. def equals(arg0: Any): Boolean
    Definition Classes
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  22. val filtersField: StructField
  23. def finalize(): Unit
    Attributes
    protected[java.lang]
    Definition Classes
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    Annotations
    @throws( classOf[java.lang.Throwable] )
  24. val genotypeFiltersField: StructField
  25. val genotypeLikelihoodsField: StructField
  26. val genotypesFieldName: String
  27. final def getClass(): Class[_]
    Definition Classes
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    Annotations
    @native()
  28. def hashCode(): Int
    Definition Classes
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    Annotations
    @native()
  29. val infoFieldPrefix: String
  30. final def isInstanceOf[T0]: Boolean
    Definition Classes
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  31. val namesField: StructField
  32. final def ne(arg0: AnyRef): Boolean
    Definition Classes
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  33. final def notify(): Unit
    Definition Classes
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    Annotations
    @native()
  34. final def notifyAll(): Unit
    Definition Classes
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    Annotations
    @native()
  35. val otherFieldsField: StructField
  36. val phasedField: StructField
  37. val phredLikelihoodsField: StructField
  38. val plinkBaseSchema: StructType
  39. def plinkGenotypeSchema(hasSampleIds: Boolean): StructField
  40. def plinkSchema(hasSampleIds: Boolean): StructType
  41. val ploidyField: StructField
  42. val positionField: StructField
  43. val posteriorProbabilitiesField: StructField
  44. val qualField: StructField
  45. val refAlleleField: StructField
  46. val sampleIdField: StructField
  47. val splitFromMultiAllelicField: StructField
  48. val startField: StructField
  49. final def synchronized[T0](arg0: ⇒ T0): T0
    Definition Classes
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  50. def toString(): String
    Definition Classes
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  51. val variantIdField: StructField
  52. val vcfBaseSchema: StructType
  53. final def wait(): Unit
    Definition Classes
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    Annotations
    @throws( ... )
  54. final def wait(arg0: Long, arg1: Int): Unit
    Definition Classes
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    Annotations
    @throws( ... )
  55. final def wait(arg0: Long): Unit
    Definition Classes
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    @native() @throws( ... )

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