Packages

package common

Ordering
  1. Alphabetic
Visibility
  1. Public
  2. All

Type Members

  1. case class GenotypeFields(sampleId: Option[String], phased: Option[Boolean], calls: Option[Seq[Int]], depth: Option[Int], filters: Option[Seq[String]], genotypeLikelihoods: Option[Seq[Double]], phredLikelihoods: Option[Seq[Int]], posteriorProbabilities: Option[Seq[Double]], conditionalQuality: Option[Int], haplotypeQualities: Option[Seq[Int]], expectedAlleleCounts: Option[Seq[Int]], mappingQuality: Option[Int], alleleDepths: Option[Seq[Int]], otherFields: Map[String, String]) extends Product with Serializable
  2. trait GlowLogging extends LazyLogging
  3. trait HasStringency extends GlowLogging
  4. trait Named extends AnyRef
  5. case class VCFRow(contigName: String, start: Long, end: Long, names: Seq[String], referenceAllele: String, alternateAlleles: Seq[String], qual: Option[Double], filters: Seq[String], attributes: Map[String, String], genotypes: Seq[GenotypeFields], splitFromMultiAllelic: Boolean = false) extends Product with Serializable

Value Members

  1. object BgenOptions
  2. object CommonOptions
  3. object GenotypeFields extends Serializable
  4. object HailUtils
  5. object PlinkOptions
  6. object VCFOptions
  7. object VCFRow extends Serializable
  8. object VariantSchemas
  9. object WithUtils

Ungrouped