Packages

package plink

Ordering
  1. Alphabetic
Visibility
  1. Public
  2. All

Type Members

  1. class BedFileIterator extends Iterator[Array[Byte]]

    Parses genotype blocks of a BED file.

    Parses genotype blocks of a BED file. The iterator assumes that the input streams are currently at the beginning of a genotype block.

    BED standard: https://www.cog-genomics.org/plink/1.9/formats#bed

    This class does not currently support the entire BED standard. Limitations: - Only variant-major BEDs are supported.

  2. class PlinkFileFormat extends FileFormat with DataSourceRegister with Serializable with GlowLogging
  3. class PlinkRowToInternalRowConverter extends GlowLogging

    Creates an InternalRow with a given required schema.

    Creates an InternalRow with a given required schema. During construction, this class will throw an IllegalArgumentException if any of the fields in the required schema cannot be derived from a PLINK record.

Value Members

  1. object PlinkFileFormat extends HlsEventRecorder with Serializable

Ungrouped