case class GenotypeStates(genotypes: Expression) extends UnaryExpression with ExpectsGenotypeFields with Product with Serializable

Converts a complex genotype array into an array of ints, where each element is the sum of the calls array for the sample at that position if no calls are missing, or -1 if any calls are missing.

Linear Supertypes
Serializable, Serializable, ExpectsGenotypeFields, UnaryExpression, Expression, TreeNode[Expression], Product, Equals, AnyRef, Any
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Inherited
  1. GenotypeStates
  2. Serializable
  3. Serializable
  4. ExpectsGenotypeFields
  5. UnaryExpression
  6. Expression
  7. TreeNode
  8. Product
  9. Equals
  10. AnyRef
  11. Any
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Visibility
  1. Public
  2. All

Instance Constructors

  1. new GenotypeStates(genotypes: Expression)

Value Members

  1. final def !=(arg0: Any): Boolean
    Definition Classes
    AnyRef → Any
  2. final def ##(): Int
    Definition Classes
    AnyRef → Any
  3. final def ==(arg0: Any): Boolean
    Definition Classes
    AnyRef → Any
  4. def apply(number: Int): TreeNode[_]
    Definition Classes
    TreeNode
  5. def argString: String
    Definition Classes
    TreeNode
  6. def asCode: String
    Definition Classes
    TreeNode
  7. final def asInstanceOf[T0]: T0
    Definition Classes
    Any
  8. lazy val canonicalized: Expression
    Definition Classes
    Expression
  9. def checkInputDataTypes(): TypeCheckResult
    Definition Classes
    ExpectsGenotypeFields → Expression
  10. def child: Expression
    Definition Classes
    GenotypeStates → UnaryExpression
  11. final def children: Seq[Expression]
    Definition Classes
    UnaryExpression → TreeNode
  12. def childrenResolved: Boolean
    Definition Classes
    Expression
  13. def clone(): AnyRef
    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @native() @throws( ... )
  14. def collect[B](pf: PartialFunction[Expression, B]): Seq[B]
    Definition Classes
    TreeNode
  15. def collectFirst[B](pf: PartialFunction[Expression, B]): Option[B]
    Definition Classes
    TreeNode
  16. def collectLeaves(): Seq[Expression]
    Definition Classes
    TreeNode
  17. lazy val containsChild: Set[TreeNode[_]]
    Definition Classes
    TreeNode
  18. def dataType: DataType
    Definition Classes
    GenotypeStates → Expression
  19. def defineCodeGen(ctx: CodegenContext, ev: ExprCode, f: (String) ⇒ String): ExprCode
    Attributes
    protected
    Definition Classes
    UnaryExpression
  20. lazy val deterministic: Boolean
    Definition Classes
    Expression
  21. def doGenCode(ctx: CodegenContext, ev: ExprCode): ExprCode
    Definition Classes
    GenotypeStates → Expression
  22. final def eq(arg0: AnyRef): Boolean
    Definition Classes
    AnyRef
  23. def eval(input: InternalRow): Any
    Definition Classes
    UnaryExpression → Expression
  24. def fastEquals(other: TreeNode[_]): Boolean
    Definition Classes
    TreeNode
  25. def finalize(): Unit
    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )
  26. def find(f: (Expression) ⇒ Boolean): Option[Expression]
    Definition Classes
    TreeNode
  27. def flatArguments: Iterator[Any]
    Attributes
    protected
    Definition Classes
    Expression
  28. def flatMap[A](f: (Expression) ⇒ TraversableOnce[A]): Seq[A]
    Definition Classes
    TreeNode
  29. def foldable: Boolean
    Definition Classes
    UnaryExpression → Expression
  30. def foreach(f: (Expression) ⇒ Unit): Unit
    Definition Classes
    TreeNode
  31. def foreachUp(f: (Expression) ⇒ Unit): Unit
    Definition Classes
    TreeNode
  32. def genCode(ctx: CodegenContext): ExprCode
    Definition Classes
    Expression
  33. def generateTreeString(depth: Int, lastChildren: Seq[Boolean], builder: StringBuilder, verbose: Boolean, prefix: String, addSuffix: Boolean): StringBuilder
    Definition Classes
    TreeNode
  34. lazy val genotypeFieldIndices: Seq[Int]
    Attributes
    protected
    Definition Classes
    ExpectsGenotypeFields
  35. def genotypeFieldsRequired: Seq[StructField]
    Definition Classes
    GenotypeStates → ExpectsGenotypeFields
  36. lazy val genotypeStructSize: Int
    Attributes
    protected
    Definition Classes
    ExpectsGenotypeFields
  37. val genotypes: Expression
  38. def genotypesExpr: Expression
    Definition Classes
    GenotypeStates → ExpectsGenotypeFields
  39. final def getClass(): Class[_]
    Definition Classes
    AnyRef → Any
    Annotations
    @native()
  40. def hashCode(): Int
    Definition Classes
    TreeNode → AnyRef → Any
  41. def innerChildren: Seq[TreeNode[_]]
    Attributes
    protected
    Definition Classes
    TreeNode
  42. final def isInstanceOf[T0]: Boolean
    Definition Classes
    Any
  43. def jsonFields: List[JField]
    Attributes
    protected
    Definition Classes
    TreeNode
  44. def makeCopy(newArgs: Array[AnyRef]): Expression
    Definition Classes
    TreeNode
  45. def map[A](f: (Expression) ⇒ A): Seq[A]
    Definition Classes
    TreeNode
  46. def mapChildren(f: (Expression) ⇒ Expression): Expression
    Definition Classes
    TreeNode
  47. def mapProductIterator[B](f: (Any) ⇒ B)(implicit arg0: ClassTag[B]): Array[B]
    Attributes
    protected
    Definition Classes
    TreeNode
  48. final def ne(arg0: AnyRef): Boolean
    Definition Classes
    AnyRef
  49. def nodeName: String
    Definition Classes
    TreeNode
  50. final def notify(): Unit
    Definition Classes
    AnyRef
    Annotations
    @native()
  51. final def notifyAll(): Unit
    Definition Classes
    AnyRef
    Annotations
    @native()
  52. def nullSafeCodeGen(ctx: CodegenContext, ev: ExprCode, f: (String) ⇒ String): ExprCode
    Attributes
    protected
    Definition Classes
    UnaryExpression
  53. def nullSafeEval(input: Any): Any
    Definition Classes
    GenotypeStates → UnaryExpression
  54. def nullable: Boolean
    Definition Classes
    UnaryExpression → Expression
  55. def numberedTreeString: String
    Definition Classes
    TreeNode
  56. lazy val optionalFieldIndices: Seq[Int]
    Attributes
    protected
    Definition Classes
    ExpectsGenotypeFields
  57. def optionalGenotypeFields: Seq[StructField]
    Attributes
    protected
    Definition Classes
    ExpectsGenotypeFields
  58. val origin: Origin
    Definition Classes
    TreeNode
  59. def otherCopyArgs: Seq[AnyRef]
    Attributes
    protected
    Definition Classes
    TreeNode
  60. def p(number: Int): Expression
    Definition Classes
    TreeNode
  61. def prettyJson: String
    Definition Classes
    TreeNode
  62. def prettyName: String
    Definition Classes
    Expression
  63. def references: AttributeSet
    Definition Classes
    Expression
  64. lazy val resolved: Boolean
    Definition Classes
    Expression
  65. def semanticEquals(other: Expression): Boolean
    Definition Classes
    Expression
  66. def semanticHash(): Int
    Definition Classes
    Expression
  67. def simpleString: String
    Definition Classes
    Expression → TreeNode
  68. def sql: String
    Definition Classes
    Expression
  69. def stringArgs: Iterator[Any]
    Attributes
    protected
    Definition Classes
    TreeNode
  70. final def synchronized[T0](arg0: ⇒ T0): T0
    Definition Classes
    AnyRef
  71. def toJSON: String
    Definition Classes
    TreeNode
  72. def toString(): String
    Definition Classes
    Expression → TreeNode → AnyRef → Any
  73. def transform(rule: PartialFunction[Expression, Expression]): Expression
    Definition Classes
    TreeNode
  74. def transformDown(rule: PartialFunction[Expression, Expression]): Expression
    Definition Classes
    TreeNode
  75. def transformUp(rule: PartialFunction[Expression, Expression]): Expression
    Definition Classes
    TreeNode
  76. def treeString(verbose: Boolean, addSuffix: Boolean): String
    Definition Classes
    TreeNode
  77. def treeString: String
    Definition Classes
    TreeNode
  78. final def verboseString: String
    Definition Classes
    Expression → TreeNode
  79. def verboseStringWithSuffix: String
    Definition Classes
    TreeNode
  80. final def wait(): Unit
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  81. final def wait(arg0: Long, arg1: Int): Unit
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  82. final def wait(arg0: Long): Unit
    Definition Classes
    AnyRef
    Annotations
    @native() @throws( ... )
  83. def withNewChildren(newChildren: Seq[Expression]): Expression
    Definition Classes
    TreeNode

Inherited from Serializable

Inherited from Serializable

Inherited from ExpectsGenotypeFields

Inherited from UnaryExpression

Inherited from Expression

Inherited from TreeNode[Expression]

Inherited from Product

Inherited from Equals

Inherited from AnyRef

Inherited from Any

Ungrouped