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io.projectglow.sql.expressions

LikelihoodRatioTest

object LikelihoodRatioTest extends LogitTest

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LogitTest, Serializable, Serializable, AnyRef, Any
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  1. LikelihoodRatioTest
  2. LogitTest
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Type Members

  1. type FitState = LRTFitState

    Type for the state that the test maintains between variants.

    Type for the state that the test maintains between variants.

    Definition Classes
    LikelihoodRatioTest → LogitTest

Value Members

  1. final def !=(arg0: Any): Boolean
    Definition Classes
    AnyRef → Any
  2. final def ##(): Int
    Definition Classes
    AnyRef → Any
  3. final def ==(arg0: Any): Boolean
    Definition Classes
    AnyRef → Any
  4. final def asInstanceOf[T0]: T0
    Definition Classes
    Any
  5. def clone(): AnyRef
    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @native() @throws( ... )
  6. final def eq(arg0: AnyRef): Boolean
    Definition Classes
    AnyRef
  7. def equals(arg0: Any): Boolean
    Definition Classes
    AnyRef → Any
  8. def finalize(): Unit
    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )
  9. def fitStatePerPhenotype: Boolean

    If true, the FitState uses per-phenotype information and must be refit for each phenotype.

    If true, the FitState uses per-phenotype information and must be refit for each phenotype. If false, the FitState only depends on the covariates

    Definition Classes
    LikelihoodRatioTest → LogitTest
  10. final def getClass(): Class[_]
    Definition Classes
    AnyRef → Any
    Annotations
    @native()
  11. def hashCode(): Int
    Definition Classes
    AnyRef → Any
    Annotations
    @native()
  12. def init(phenotypes: Array[Double], covariates: DenseMatrix): LRTFitState

    Initializes a FitState for a (covariate matrix, phenotype array) pair.

    Initializes a FitState for a (covariate matrix, phenotype array) pair.

    As much memory allocation as possible should be performed in this step to avoid allocations in the per-row fit.

    Definition Classes
    LikelihoodRatioTest → LogitTest
  13. final def isInstanceOf[T0]: Boolean
    Definition Classes
    Any
  14. final def ne(arg0: AnyRef): Boolean
    Definition Classes
    AnyRef
  15. final def notify(): Unit
    Definition Classes
    AnyRef
    Annotations
    @native()
  16. final def notifyAll(): Unit
    Definition Classes
    AnyRef
    Annotations
    @native()
  17. val resultSchema: StructType
    Definition Classes
    LikelihoodRatioTest → LogitTest
  18. def runTest(genotypes: DenseVector[Double], phenotypes: DenseVector[Double], fitState: LRTFitState): InternalRow
    Definition Classes
    LikelihoodRatioTest → LogitTest
  19. final def synchronized[T0](arg0: ⇒ T0): T0
    Definition Classes
    AnyRef
  20. def toString(): String
    Definition Classes
    AnyRef → Any
  21. final def wait(): Unit
    Definition Classes
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    Annotations
    @throws( ... )
  22. final def wait(arg0: Long, arg1: Int): Unit
    Definition Classes
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    @throws( ... )
  23. final def wait(arg0: Long): Unit
    Definition Classes
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    @native() @throws( ... )

Inherited from LogitTest

Inherited from Serializable

Inherited from Serializable

Inherited from AnyRef

Inherited from Any

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