trait LogitTest extends Serializable

Base trait for logistic regression tests

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FirthTest, LikelihoodRatioTest
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  1. abstract type FitState

    Type for the state that the test maintains between variants.

Abstract Value Members

  1. abstract def fitStatePerPhenotype: Boolean

    If true, the FitState uses per-phenotype information and must be refit for each phenotype.

    If true, the FitState uses per-phenotype information and must be refit for each phenotype. If false, the FitState only depends on the covariates

  2. abstract def init(phenotypes: Array[Double], covariates: DenseMatrix): FitState

    Initializes a FitState for a (covariate matrix, phenotype array) pair.

    Initializes a FitState for a (covariate matrix, phenotype array) pair.

    As much memory allocation as possible should be performed in this step to avoid allocations in the per-row fit.

  3. abstract def resultSchema: StructType
  4. abstract def runTest(genotypes: DenseVector[Double], phenotypes: DenseVector[Double], fitState: FitState): InternalRow

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