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io.projectglow.sql.expressions

VariantUtilExprs

object VariantUtilExprs

Implementations of utility functions for transforming variant representations. These implementations are called during both whole-stage codegen and interpreted execution.

The functions are exposed to the user as Catalyst expressions.

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Value Members

  1. final def !=(arg0: Any): Boolean
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  2. final def ##(): Int
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  3. final def ==(arg0: Any): Boolean
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  4. final def asInstanceOf[T0]: T0
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  5. def clone(): AnyRef
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    protected[java.lang]
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    @native() @throws( ... )
  6. def containsTransition(refAllele: UTF8String, altAllele: UTF8String): Boolean
  7. def containsTransversion(refAllele: UTF8String, altAllele: UTF8String): Boolean
  8. final def eq(arg0: AnyRef): Boolean
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  9. def equals(arg0: Any): Boolean
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  10. def finalize(): Unit
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    protected[java.lang]
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    @throws( classOf[java.lang.Throwable] )
  11. def genotypeStates(genotypes: ArrayData, genotypesSize: Int, genotypesIdx: Int): ArrayData
  12. final def getClass(): Class[_]
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    @native()
  13. def hashCode(): Int
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    @native()
  14. def isDeletion(refAllele: UTF8String, altAllele: UTF8String): Boolean
  15. def isInsertion(refAllele: UTF8String, altAllele: UTF8String): Boolean
  16. final def isInstanceOf[T0]: Boolean
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  17. def isSnp(refAllele: UTF8String, altAllele: UTF8String): Boolean
  18. final def ne(arg0: AnyRef): Boolean
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  19. final def notify(): Unit
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    @native()
  20. final def notifyAll(): Unit
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    @native()
  21. final def synchronized[T0](arg0: ⇒ T0): T0
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  22. def toString(): String
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  23. def variantType(refAllele: UTF8String, altAllele: UTF8String): VariantType
  24. final def wait(): Unit
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    @throws( ... )
  25. final def wait(arg0: Long, arg1: Int): Unit
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    @throws( ... )
  26. final def wait(arg0: Long): Unit
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