Packages

class BGZFCodec extends org.seqdoop.hadoop_bam.util.BGZFCodec

A copy of Hadoop-BAM's BGZF codec that returns a Databricks BGZF output stream.

Linear Supertypes
org.seqdoop.hadoop_bam.util.BGZFCodec, SplittableCompressionCodec, GzipCodec, DefaultCodec, DirectDecompressionCodec, CompressionCodec, Configurable, AnyRef, Any
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Inherited
  1. BGZFCodec
  2. BGZFCodec
  3. SplittableCompressionCodec
  4. GzipCodec
  5. DefaultCodec
  6. DirectDecompressionCodec
  7. CompressionCodec
  8. Configurable
  9. AnyRef
  10. Any
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Visibility
  1. Public
  2. All

Instance Constructors

  1. new BGZFCodec()

Value Members

  1. final def !=(arg0: Any): Boolean
    Definition Classes
    AnyRef → Any
  2. final def ##(): Int
    Definition Classes
    AnyRef → Any
  3. final def ==(arg0: Any): Boolean
    Definition Classes
    AnyRef → Any
  4. final def asInstanceOf[T0]: T0
    Definition Classes
    Any
  5. def clone(): AnyRef
    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @native() @throws( ... )
  6. def createCompressor(): Compressor
    Definition Classes
    BGZFCodec → GzipCodec → DefaultCodec → CompressionCodec
  7. def createDecompressor(): Decompressor
    Definition Classes
    GzipCodec → DefaultCodec → CompressionCodec
  8. def createDirectDecompressor(): DirectDecompressor
    Definition Classes
    GzipCodec → DefaultCodec → DirectDecompressionCodec
  9. def createInputStream(arg0: InputStream, arg1: Decompressor, arg2: Long, arg3: Long, arg4: READ_MODE): SplitCompressionInputStream
    Definition Classes
    BGZFCodec → SplittableCompressionCodec
    Annotations
    @throws( classOf[java.io.IOException] )
  10. def createInputStream(arg0: InputStream, arg1: Decompressor): CompressionInputStream
    Definition Classes
    GzipCodec → DefaultCodec → CompressionCodec
    Annotations
    @throws( classOf[java.io.IOException] )
  11. def createInputStream(arg0: InputStream): CompressionInputStream
    Definition Classes
    GzipCodec → DefaultCodec → CompressionCodec
    Annotations
    @throws( classOf[java.io.IOException] )
  12. def createOutputStream(out: OutputStream, compressor: Compressor): CompressionOutputStream
    Definition Classes
    BGZFCodec → BGZFCodec → GzipCodec → DefaultCodec → CompressionCodec
  13. def createOutputStream(out: OutputStream): CompressionOutputStream
    Definition Classes
    BGZFCodec → BGZFCodec → GzipCodec → DefaultCodec → CompressionCodec
  14. final def eq(arg0: AnyRef): Boolean
    Definition Classes
    AnyRef
  15. def equals(arg0: Any): Boolean
    Definition Classes
    AnyRef → Any
  16. def finalize(): Unit
    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )
  17. final def getClass(): Class[_]
    Definition Classes
    AnyRef → Any
    Annotations
    @native()
  18. def getCompressorType(): Class[_ <: Compressor]
    Definition Classes
    BGZFCodec → GzipCodec → DefaultCodec → CompressionCodec
  19. def getConf(): Configuration
    Definition Classes
    DefaultCodec → Configurable
  20. def getDecompressorType(): Class[_ <: Decompressor]
    Definition Classes
    GzipCodec → DefaultCodec → CompressionCodec
  21. def getDefaultExtension(): String
    Definition Classes
    BGZFCodec → GzipCodec → DefaultCodec → CompressionCodec
  22. def hashCode(): Int
    Definition Classes
    AnyRef → Any
    Annotations
    @native()
  23. final def isInstanceOf[T0]: Boolean
    Definition Classes
    Any
  24. final def ne(arg0: AnyRef): Boolean
    Definition Classes
    AnyRef
  25. final def notify(): Unit
    Definition Classes
    AnyRef
    Annotations
    @native()
  26. final def notifyAll(): Unit
    Definition Classes
    AnyRef
    Annotations
    @native()
  27. def setConf(arg0: Configuration): Unit
    Definition Classes
    DefaultCodec → Configurable
  28. final def synchronized[T0](arg0: ⇒ T0): T0
    Definition Classes
    AnyRef
  29. def toString(): String
    Definition Classes
    AnyRef → Any
  30. final def wait(): Unit
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  31. final def wait(arg0: Long, arg1: Int): Unit
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  32. final def wait(arg0: Long): Unit
    Definition Classes
    AnyRef
    Annotations
    @native() @throws( ... )

Inherited from org.seqdoop.hadoop_bam.util.BGZFCodec

Inherited from SplittableCompressionCodec

Inherited from GzipCodec

Inherited from DefaultCodec

Inherited from DirectDecompressionCodec

Inherited from CompressionCodec

Inherited from Configurable

Inherited from AnyRef

Inherited from Any

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