Value Members

1.  final def !=(arg0: Any): Boolean

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2.  final def ##(): Int

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3.  final def ==(arg0: Any): Boolean

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4.  final def asInstanceOf[T0]: T0

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5.  def clone(): AnyRef

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   protected[java.lang]

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6.  val conversionErrorMessage: String
7.  final def eq(arg0: AnyRef): Boolean

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8.  def equals(arg0: Any): Boolean

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9.  val errorMessageColName: String
10.  def finalize(): Unit

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    protected[java.lang]

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    @throws( classOf[java.lang.Throwable] )

11.  def getArrayFields(fields: Seq[StructField]): Seq[String]
12.  def getAttributesToSwap(variantSchema: StructType): Seq[String]
13.  final def getClass(): Class[_]

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14.  def getExtendedAttributesToSwap(variantSchema: StructType): Seq[String]
15.  def getLiftOver(options: Map[String, String]): LiftOver
16.  def getMinMatchRatio(options: Map[String, String]): Double
17.  def getOutputSchema(inputSchema: StructType): StructType
18.  def getRefSeqMap(options: Map[String, String]): Map[String, ReferenceSequence]
19.  def hashCode(): Int

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20.  final def isInstanceOf[T0]: Boolean

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21.  val liftOverStatusColName: String
22.  def liftVariantContext(inputVc: VariantContext, liftOver: LiftOver, minMatchRatio: Double, refSeqMap: Map[String, ReferenceSequence], infoFieldsToSwap: Seq[String], formatFieldsToSwap: Seq[String]): (Option[VariantContext], Option[String])
23.  lazy val logger: Logger

    Attributes

    protected

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    LazyLogging

24.  def makeMutableProjection(inputSchema: StructType): MutableProjection
25.  final def ne(arg0: AnyRef): Boolean

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26.  final def notify(): Unit

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    @native()

27.  final def notifyAll(): Unit

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    @native()

28.  val successColName: String
29.  def swapRefAlt(vc: VariantContext, infoFieldsToSwap: Seq[String], formatFieldsToSwap: Seq[String]): VariantContext
30.  final def synchronized[T0](arg0: ⇒ T0): T0

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31.  def toString(): String

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32.  final def wait(): Unit

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33.  final def wait(arg0: Long, arg1: Int): Unit

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    @throws( ... )

34.  final def wait(arg0: Long): Unit

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