package transformers
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Type Members
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class
LiftOverVariantsTransformer extends DataFrameTransformer
Performs lift over from a variant on the reference sequence to a query sequence.
Performs lift over from a variant on the reference sequence to a query sequence. Similar to LiftOverCoordinatesExpr, but with additional fields for allele liftover.
The output schema consists of the input schema followed by the following fields: - Flattened INFO columns containing extra information added during liftover (eg. swapped alleles) - Status column
- Success (Boolean)
- Error message (if failed)
Value Members
- object LiftOverVariantsTransformer extends GlowLogging