Packages

object NormalizeVariantsTransformer

Linear Supertypes
AnyRef, Any
Ordering
  1. Alphabetic
  2. By Inheritance
Inherited
  1. NormalizeVariantsTransformer
  2. AnyRef
  3. Any
  1. Hide All
  2. Show All
Visibility
  1. Public
  2. All

Value Members

  1. final def !=(arg0: Any): Boolean
    Definition Classes
    AnyRef → Any
  2. final def ##(): Int
    Definition Classes
    AnyRef → Any
  3. final def ==(arg0: Any): Boolean
    Definition Classes
    AnyRef → Any
  4. val NORMALIZER_TRANSFORMER_NAME: String
  5. val REFERENCE_GENOME_PATH: String
  6. val REPLACE_COLUMNS: String
  7. final def asInstanceOf[T0]: T0
    Definition Classes
    Any
  8. def clone(): AnyRef
    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @native() @throws( ... )
  9. final def eq(arg0: AnyRef): Boolean
    Definition Classes
    AnyRef
  10. def equals(arg0: Any): Boolean
    Definition Classes
    AnyRef → Any
  11. def finalize(): Unit
    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )
  12. final def getClass(): Class[_]
    Definition Classes
    AnyRef → Any
    Annotations
    @native()
  13. def hashCode(): Int
    Definition Classes
    AnyRef → Any
    Annotations
    @native()
  14. final def isInstanceOf[T0]: Boolean
    Definition Classes
    Any
  15. final def ne(arg0: AnyRef): Boolean
    Definition Classes
    AnyRef
  16. def normalizeVariants(df: DataFrame, refGenomePathString: String, replaceColumns: Boolean): DataFrame

    Normalizes the input DataFrame of variants and outputs them as a Dataframe using normalize_variant expression and handles the replace_columns option

    Normalizes the input DataFrame of variants and outputs them as a Dataframe using normalize_variant expression and handles the replace_columns option

    df

    : Input dataframe of variants

    refGenomePathString

    : Path to the underlying reference genome of the variants

    replaceColumns

    : replace original columns or not

    returns

    normalized DataFrame

  17. final def notify(): Unit
    Definition Classes
    AnyRef
    Annotations
    @native()
  18. final def notifyAll(): Unit
    Definition Classes
    AnyRef
    Annotations
    @native()
  19. final def synchronized[T0](arg0: ⇒ T0): T0
    Definition Classes
    AnyRef
  20. def toString(): String
    Definition Classes
    AnyRef → Any
  21. def validateRefGenomeOption(refGenomePathString: Option[String]): Unit
  22. final def wait(): Unit
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  23. final def wait(arg0: Long, arg1: Int): Unit
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  24. final def wait(arg0: Long): Unit
    Definition Classes
    AnyRef
    Annotations
    @native() @throws( ... )

Deprecated Value Members

  1. val MODE_KEY: String
    Annotations
    @deprecated
    Deprecated

    normalize_variants transformer is now for normalization only. split_multiallelics transformer should be used separately for splitting multiallelics

  2. val MODE_NORMALIZE: String
    Annotations
    @deprecated
    Deprecated

    normalize_variants transformer is now for normalization only. split_multiallelics transformer should be used separately for splitting multiallelics

  3. val MODE_SPLIT: String
    Annotations
    @deprecated
    Deprecated

    normalize_variants transformer is now for normalization only. split_multiallelics transformer should be used separately for splitting multiallelics

  4. val MODE_SPLIT_NORMALIZE: String
    Annotations
    @deprecated
    Deprecated

    normalize_variants transformer is now for normalization only. split_multiallelics transformer should be used separately for splitting multiallelics

Inherited from AnyRef

Inherited from Any

Ungrouped