Packages

class SplitMultiallelicsTransformer extends DataFrameTransformer with HlsUsageLogging

Implements DataFrameTransformer to transform the input DataFrame of variants to an output DataFrame in which multiallelic rows are split to biallelic (split logic is the one used by vt decompose -s).

Linear Supertypes
HlsUsageLogging, GlowLogging, LazyLogging, DataFrameTransformer, Named, AnyRef, Any
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Inherited
  1. SplitMultiallelicsTransformer
  2. HlsUsageLogging
  3. GlowLogging
  4. LazyLogging
  5. DataFrameTransformer
  6. Named
  7. AnyRef
  8. Any
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Visibility
  1. Public
  2. All

Instance Constructors

  1. new SplitMultiallelicsTransformer()

Value Members

  1. final def !=(arg0: Any): Boolean
    Definition Classes
    AnyRef → Any
  2. final def ##(): Int
    Definition Classes
    AnyRef → Any
  3. final def ==(arg0: Any): Boolean
    Definition Classes
    AnyRef → Any
  4. final def asInstanceOf[T0]: T0
    Definition Classes
    Any
  5. def clone(): AnyRef
    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @native() @throws( ... )
  6. final def eq(arg0: AnyRef): Boolean
    Definition Classes
    AnyRef
  7. def equals(arg0: Any): Boolean
    Definition Classes
    AnyRef → Any
  8. def finalize(): Unit
    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )
  9. final def getClass(): Class[_]
    Definition Classes
    AnyRef → Any
    Annotations
    @native()
  10. def hashCode(): Int
    Definition Classes
    AnyRef → Any
    Annotations
    @native()
  11. def hlsJsonBuilder(options: Map[String, Any]): String
    Attributes
    protected
    Definition Classes
    HlsUsageLogging
  12. final def isInstanceOf[T0]: Boolean
    Definition Classes
    Any
  13. lazy val logger: Logger
    Attributes
    protected
    Definition Classes
    LazyLogging
  14. def name: String
    Definition Classes
    SplitMultiallelicsTransformer → Named
  15. final def ne(arg0: AnyRef): Boolean
    Definition Classes
    AnyRef
  16. final def notify(): Unit
    Definition Classes
    AnyRef
    Annotations
    @native()
  17. final def notifyAll(): Unit
    Definition Classes
    AnyRef
    Annotations
    @native()
  18. def recordHlsUsage(metric: MetricDefinition, tags: Map[TagDefinition, String] = Map.empty, blob: String = null): Unit
    Attributes
    protected
    Definition Classes
    HlsUsageLogging
  19. final def synchronized[T0](arg0: ⇒ T0): T0
    Definition Classes
    AnyRef
  20. def toString(): String
    Definition Classes
    AnyRef → Any
  21. def transform(df: DataFrame, options: Map[String, String]): DataFrame
    Definition Classes
    SplitMultiallelicsTransformer → DataFrameTransformer
  22. final def wait(): Unit
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  23. final def wait(arg0: Long, arg1: Int): Unit
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  24. final def wait(arg0: Long): Unit
    Definition Classes
    AnyRef
    Annotations
    @native() @throws( ... )

Inherited from HlsUsageLogging

Inherited from GlowLogging

Inherited from LazyLogging

Inherited from DataFrameTransformer

Inherited from Named

Inherited from AnyRef

Inherited from Any

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