object VCFHeaderUtils extends GlowLogging
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- val INFER_HEADER: String
- val VCF_HEADER_KEY: String
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- def createHeaderRDD(spark: SparkSession, files: Seq[String]): RDD[VCFHeader]
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def
getUniqueHeaderLines(headers: RDD[VCFHeader]): Seq[VCFCompoundHeaderLine]
Find the unique header lines from an RDD of VCF headers.
Find the unique header lines from an RDD of VCF headers. If there are incompatible lines, meaning lines with the same ID but different types or counts, an IllegalArgumentException is thrown.
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- def parseHeaderFromString(s: String): VCFHeader
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def
readHeaderLines(spark: SparkSession, files: Seq[String]): Seq[VCFCompoundHeaderLine]
A convenience function to parse the headers from a set of VCF files and return the unique header lines.
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