class VCFInputFormatter extends InputFormatter with GlowLogging
An input formatter that writes rows as VCF records.
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Instance Constructors
- new VCFInputFormatter(converter: InternalRowToVariantContextConverter, sampleIdInfo: SampleIdInfo)
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final
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def
close(): Unit
- Definition Classes
- VCFInputFormatter → InputFormatter → Closeable → AutoCloseable
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def
init(stream: OutputStream): Unit
Initialize the input formatter based on the outstream (i.e., the subprocess's stdout).
Initialize the input formatter based on the outstream (i.e., the subprocess's stdout).
This method is called per-partition, so all non-serializable initialization should happen here.
- Definition Classes
- VCFInputFormatter → InputFormatter
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lazy val
logger: Logger
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def
write(record: InternalRow): Unit
Write a DataFrame record to the subprocess's stdout stream.
Write a DataFrame record to the subprocess's stdout stream.
- Definition Classes
- VCFInputFormatter → InputFormatter