Value Members

1.  final def !=(arg0: Any): Boolean

   Definition Classes

   AnyRef → Any

2.  final def ##(): Int

   Definition Classes

   AnyRef → Any

3.  final def ==(arg0: Any): Boolean

   Definition Classes

   AnyRef → Any

4.  final def asInstanceOf[T0]: T0

   Definition Classes

   Any

5.  def clone(): AnyRef

   Attributes

   protected[java.lang]

   Definition Classes

   AnyRef

   Annotations

   @native() @throws( ... )

6.  def convertVcAttributesToStrings(vc: VariantContext): VariantContextBuilder
7.  final def eq(arg0: AnyRef): Boolean

   Definition Classes

   AnyRef

8.  def equals(arg0: Any): Boolean

   Definition Classes

   AnyRef → Any

9.  def finalize(): Unit

   Attributes

   protected[java.lang]

   Definition Classes

   AnyRef

   Annotations

   @throws( classOf[java.lang.Throwable] )

10.  final def getClass(): Class[_]

    Definition Classes

    AnyRef → Any

    Annotations

    @native()

11.  def hashCode(): Int

    Definition Classes

    AnyRef → Any

    Annotations

    @native()

12.  def inferSampleIdsIfPresent(data: DataFrame): SampleIdInfo

    Infer sample IDs from a genomic DataFrame.

    Infer sample IDs from a genomic DataFrame.

    - If there are no genotypes, there are no sample IDs. - If there are genotypes and sample IDs are all...

    • Present, the sample IDs are found by unifying sample IDs across all rows.
    • Missing, checks that the rows have the same number of genotypes.
13.  final def isInstanceOf[T0]: Boolean

    Definition Classes

    Any

14.  lazy val logger: Logger

    Attributes

    protected

    Definition Classes

    LazyLogging

15.  final def ne(arg0: AnyRef): Boolean

    Definition Classes

    AnyRef

16.  final def notify(): Unit

    Definition Classes

    AnyRef

    Annotations

    @native()

17.  final def notifyAll(): Unit

    Definition Classes

    AnyRef

    Annotations

    @native()

18.  def sampleIsMissing(s: String): Boolean
19.  final def synchronized[T0](arg0: ⇒ T0): T0

    Definition Classes

    AnyRef

20.  def throwMixedSamplesFailure(): Unit
21.  def throwSampleInferenceFailure(): Unit
22.  def toString(): String

    Definition Classes

    AnyRef → Any

23.  final def wait(): Unit

    Definition Classes

    AnyRef

    Annotations

    @throws( ... )

24.  final def wait(arg0: Long, arg1: Int): Unit

    Definition Classes

    AnyRef

    Annotations

    @throws( ... )

25.  final def wait(arg0: Long): Unit

    Definition Classes

    AnyRef

    Annotations

    @native() @throws( ... )