ConcurrentOWLOntologyImpl (OWLAPI Distribution 4.2.2 API)

java.lang.Object
- uk.ac.manchester.cs.owl.owlapi.concurrent.ConcurrentOWLOntologyImpl

All Implemented Interfaces:

Serializable, Comparable<OWLObject>, HasAnnotationPropertiesInSignature, HasAnnotations, HasAnonymousIndividuals, HasApplyChange, HasApplyChanges, HasAxioms, HasAxiomsByType, HasClassesInSignature, HasContainsAxiom, HasContainsEntityInSignature, HasDataPropertiesInSignature, HasDatatypesInSignature, HasDirectAddAxiom, HasDirectAddAxioms, HasDirectImports, HasGetEntitiesInSignature, HasImportsClosure, HasIndividualsInSignature, HasLogicalAxioms, HasObjectPropertiesInSignature, HasOntologyID, HasSignature, OWLAxiomCollection, OWLAxiomCollectionBooleanArgs, OWLAxiomCollectionNoArgs, OWLAxiomIndex, OWLMutableOntology, OWLObject, OWLOntology, OWLSignature, OWLSignatureBooleanArgs, HasTrimToSize
```
public class ConcurrentOWLOntologyImpl
extends Object
implements OWLMutableOntology, HasTrimToSize
```
Matthew Horridge Stanford Center for Biomedical Informatics Research 03/04/15

See Also:

Serialized Form

Constructor Summary

Constructors
Constructor and Description
`ConcurrentOWLOntologyImpl(OWLOntology delegate, ReadWriteLock readWriteLock)` Constructs a ConcurrentOWLOntology that provides concurrent access to a delegate `OWLOntology`.

Method Summary

All Methods Instance Methods Concrete Methods Deprecated Methods
Modifier and Type	Method and Description
`void`	`accept(OWLNamedObjectVisitor owlNamedObjectVisitor)` accept for named object visitor
`<O> O`	`accept(OWLNamedObjectVisitorEx<O> owlNamedObjectVisitorEx)` Accepts a visitor
`void`	`accept(OWLObjectVisitor owlObjectVisitor)` Accepts a visitor
`<O> O`	`accept(OWLObjectVisitorEx<O> owlObjectVisitorEx)` Accepts a visitor
`ChangeApplied`	`addAxiom(OWLAxiom owlAxiom)` A convenience method that adds a single axiom to an ontology.
`ChangeApplied`	`addAxioms(Set<? extends OWLAxiom> set)` A convenience method that adds a set of axioms to an ontology.
`ChangeApplied`	`applyChange(OWLOntologyChange owlOntologyChange)` A convenience method that applies just one change to an ontology that is managed by this manager.
`ChangeApplied`	`applyChanges(List<? extends OWLOntologyChange> list)` Applies a list ontology changes to a collection of ontologies.
`int`	`compareTo(OWLObject o)`
`boolean`	`contains(OWLAxiomSearchFilter owlAxiomSearchFilter, Object o, Imports imports)` Generic containment check type for further refining search by axiom type.
`boolean`	`containsAnnotationPropertyInSignature(IRI iri)` Determines if the signature contains an OWLAnnotationProperty that has the specified IRI.
`boolean`	`containsAnnotationPropertyInSignature(IRI iri, boolean b)` Deprecated.
`boolean`	`containsAnnotationPropertyInSignature(IRI iri, Imports imports)` Determines if the signature contains an OWLAnnotationProperty that has the specified IRI.
`boolean`	`containsAxiom(OWLAxiom owlAxiom)` Determines whether or not this object contains a particular `OWLAxiom`.
`boolean`	`containsAxiom(OWLAxiom owlAxiom, boolean b)` Deprecated.
`boolean`	`containsAxiom(OWLAxiom owlAxiom, Imports imports, AxiomAnnotations axiomAnnotations)` Determines if this ontology contains the specified axiom, optionally including the imports closure.
`boolean`	`containsAxiomIgnoreAnnotations(OWLAxiom owlAxiom)` Determines if this ontology contains the specified axiom.
`boolean`	`containsAxiomIgnoreAnnotations(OWLAxiom owlAxiom, boolean b)` Deprecated.
`boolean`	`containsClassInSignature(IRI iri)` Determines if the signature contains an OWLClass that has the specified IRI.
`boolean`	`containsClassInSignature(IRI iri, boolean b)` Deprecated.
`boolean`	`containsClassInSignature(IRI iri, Imports imports)` Determines if the signature contains an OWLClass that has the specified IRI.
`boolean`	`containsDataPropertyInSignature(IRI iri)` Determines if the signature contains an OWLDataProperty that has the specified IRI.
`boolean`	`containsDataPropertyInSignature(IRI iri, boolean b)` Deprecated.
`boolean`	`containsDataPropertyInSignature(IRI iri, Imports imports)` Determines if the signature contains an OWLDataProperty that has the specified IRI.
`boolean`	`containsDatatypeInSignature(IRI iri)` Determines if the signature contains an OWLDatatype that has the specified IRI.
`boolean`	`containsDatatypeInSignature(IRI iri, boolean b)` Deprecated.
`boolean`	`containsDatatypeInSignature(IRI iri, Imports imports)` Determines if the signature contains an OWLDatatype that has the specified IRI.
`boolean`	`containsEntityInSignature(IRI iri)` Determines if the signature contains an entity with the specified IRI.
`boolean`	`containsEntityInSignature(IRI iri, boolean b)` Deprecated.
`boolean`	`containsEntityInSignature(IRI iri, Imports imports)` Determines if the signature contains an entity with the specified IRI.
`boolean`	`containsEntityInSignature(OWLEntity owlEntity)` Determines if the signature of this object contains the specified entity.
`boolean`	`containsEntityInSignature(OWLEntity owlEntity, boolean b)` Deprecated.
`boolean`	`containsEntityInSignature(OWLEntity owlEntity, Imports imports)` Determines if the signature contains the specified entity.
`boolean`	`containsIndividualInSignature(IRI iri)` Determines if the signature contains an OWLNamedIndividual that has the specified IRI.
`boolean`	`containsIndividualInSignature(IRI iri, boolean b)` Deprecated.
`boolean`	`containsIndividualInSignature(IRI iri, Imports imports)` Determines if the signature contains an OWLNamedIndividual that has the specified IRI.
`boolean`	`containsObjectPropertyInSignature(IRI iri)` Determines if the signature contains an OWLObjectProperty that has the specified IRI.
`boolean`	`containsObjectPropertyInSignature(IRI iri, boolean b)` Deprecated.
`boolean`	`containsObjectPropertyInSignature(IRI iri, Imports imports)` Determines if the signature contains an OWLObjectProperty that has the specified IRI.
`boolean`	`containsReference(OWLEntity owlEntity)`
`boolean`	`containsReference(OWLEntity owlEntity, boolean b)` Deprecated.
`boolean`	`containsReference(OWLEntity owlEntity, Imports imports)`
`boolean`	`equals(Object obj)`
`<T extends OWLAxiom> Collection<T>`	`filterAxioms(OWLAxiomSearchFilter owlAxiomSearchFilter, Object o, Imports imports)` Generic filter type for further refining search by axiom type.
`Set<OWLAxiom>`	`getABoxAxioms(Imports imports)` Gets the axioms that form the ABox for this ontology, i.e., the ones whose type is in the AxiomType::ABoxAxiomTypes.
`Set<OWLAnnotationAssertionAxiom>`	`getAnnotationAssertionAxioms(OWLAnnotationSubject owlAnnotationSubject)` Gets the axioms that annotate the specified entity.
`Set<OWLAnnotationProperty>`	`getAnnotationPropertiesInSignature()` A convenience method that obtains the annotation properties that are in the signature of this object
`Set<OWLAnnotationProperty>`	`getAnnotationPropertiesInSignature(boolean b)` Deprecated.
`Set<OWLAnnotationProperty>`	`getAnnotationPropertiesInSignature(Imports imports)` Gets the annotation properties in the signature and optionally the imports closure.
`Set<OWLAnnotationPropertyDomainAxiom>`	`getAnnotationPropertyDomainAxioms(OWLAnnotationProperty owlAnnotationProperty)` Gets the `OWLAnnotationPropertyDomainAxiom`s where the specified property is the property in the domain axiom.
`Set<OWLAnnotationPropertyRangeAxiom>`	`getAnnotationPropertyRangeAxioms(OWLAnnotationProperty owlAnnotationProperty)` Gets the `OWLAnnotationPropertyRangeAxiom`s where the specified property is the property in the range axiom.
`Set<OWLAnnotation>`	`getAnnotations()` Gets the annotations on this ontology.
`Set<OWLAnonymousIndividual>`	`getAnonymousIndividuals()` Gets the anonymous individuals occurring in this object.
`Set<OWLAsymmetricObjectPropertyAxiom>`	`getAsymmetricObjectPropertyAxioms(OWLObjectPropertyExpression owlObjectPropertyExpression)` Gets the `OWLAsymmetricObjectPropertyAxiom`s contained in this ontology that make the specified object property asymmetric.
`int`	`getAxiomCount()`
`<T extends OWLAxiom> int`	`getAxiomCount(AxiomType<T> axiomType)` Gets the axiom count of a specific type of axiom.
`<T extends OWLAxiom> int`	`getAxiomCount(AxiomType<T> axiomType, boolean b)` Deprecated.
`<T extends OWLAxiom> int`	`getAxiomCount(AxiomType<T> axiomType, Imports imports)` Gets the axiom count of a specific type of axiom, optionally including the imports closure.
`int`	`getAxiomCount(boolean b)` Deprecated.
`int`	`getAxiomCount(Imports imports)`
`Set<OWLAxiom>`	`getAxioms()` Gets the `OWLAxiom`s contained in this object.
`<T extends OWLAxiom> Set<T>`	`getAxioms(AxiomType<T> axiomType)` Gets the axioms which are of the specified type.
`<T extends OWLAxiom> Set<T>`	`getAxioms(AxiomType<T> axiomType, boolean b)` Deprecated.
`<T extends OWLAxiom> Set<T>`	`getAxioms(AxiomType<T> axiomType, Imports imports)` Gets all axioms of the specified type.
`Set<OWLAxiom>`	`getAxioms(boolean b)` Deprecated.
`<T extends OWLAxiom> Set<T>`	`getAxioms(Class<T> aClass, Class<? extends OWLObject> aClass1, OWLObject owlObject, Imports imports, Navigation navigation)` Generic search method: resutns all axioms which refer entity, are instances of type, optionally including the imports closure in the results.
`<T extends OWLAxiom> Set<T>`	`getAxioms(Class<T> aClass, OWLObject owlObject, Imports imports, Navigation navigation)` Generic search method: returns all axioms which refer entity, are instances of type, optionally including the imports closure in the results.
`Set<OWLAxiom>`	`getAxioms(Imports imports)`
`Set<OWLAnnotationAxiom>`	`getAxioms(OWLAnnotationProperty owlAnnotationProperty)` Deprecated.
`Set<OWLAnnotationAxiom>`	`getAxioms(OWLAnnotationProperty owlAnnotationProperty, boolean b)` Deprecated.
`Set<OWLAnnotationAxiom>`	`getAxioms(OWLAnnotationProperty owlAnnotationProperty, Imports imports)` Gets the axioms that form the definition/description of an annotation property.
`Set<OWLClassAxiom>`	`getAxioms(OWLClass owlClass)` Deprecated.
`Set<OWLClassAxiom>`	`getAxioms(OWLClass owlClass, boolean b)` Deprecated.
`Set<OWLClassAxiom>`	`getAxioms(OWLClass owlClass, Imports imports)` Gets the axioms that form the definition/description of a class.
`Set<OWLDataPropertyAxiom>`	`getAxioms(OWLDataProperty owlDataProperty)` Deprecated.
`Set<OWLDataPropertyAxiom>`	`getAxioms(OWLDataProperty owlDataProperty, boolean b)` Deprecated.
`Set<OWLDataPropertyAxiom>`	`getAxioms(OWLDataProperty owlDataProperty, Imports imports)` Gets the axioms that form the definition/description of a data property.
`Set<OWLDatatypeDefinitionAxiom>`	`getAxioms(OWLDatatype owlDatatype)` Deprecated.
`Set<OWLDatatypeDefinitionAxiom>`	`getAxioms(OWLDatatype owlDatatype, boolean b)` Deprecated.
`Set<OWLDatatypeDefinitionAxiom>`	`getAxioms(OWLDatatype owlDatatype, Imports imports)` Gets the datatype definition axioms for the specified datatype.
`Set<OWLIndividualAxiom>`	`getAxioms(OWLIndividual owlIndividual)` Deprecated.
`Set<OWLIndividualAxiom>`	`getAxioms(OWLIndividual owlIndividual, boolean b)` Deprecated.
`Set<OWLIndividualAxiom>`	`getAxioms(OWLIndividual owlIndividual, Imports imports)` Gets the axioms that form the definition/description of an individual.
`Set<OWLObjectPropertyAxiom>`	`getAxioms(OWLObjectPropertyExpression owlObjectPropertyExpression)` Deprecated.
`Set<OWLObjectPropertyAxiom>`	`getAxioms(OWLObjectPropertyExpression owlObjectPropertyExpression, boolean b)` Deprecated.
`Set<OWLObjectPropertyAxiom>`	`getAxioms(OWLObjectPropertyExpression owlObjectPropertyExpression, Imports imports)` Gets the axioms that form the definition/description of an object property.
`Set<OWLAxiom>`	`getAxiomsIgnoreAnnotations(OWLAxiom owlAxiom)` Gets the set of axioms contained in this collection that have the same "logical structure" as the specified axiom; i.e., all axioms that equal the specified axiom, when ignoring annotations.
`Set<OWLAxiom>`	`getAxiomsIgnoreAnnotations(OWLAxiom owlAxiom, boolean b)` Deprecated.
`Set<OWLAxiom>`	`getAxiomsIgnoreAnnotations(OWLAxiom owlAxiom, Imports imports)` Gets the set of axioms contained in this collection that have the same "logical structure" as the specified axiom; i.e., all axioms that equal the specified axiom, when ignoring annotations.
`Set<OWLClassAssertionAxiom>`	`getClassAssertionAxioms(OWLClassExpression owlClassExpression)` Gets the `OWLClassAssertionAxiom`s contained in this ontology that make the specified class expression, `ce`, a type for some individual.
`Set<OWLClassAssertionAxiom>`	`getClassAssertionAxioms(OWLIndividual owlIndividual)` Gets the `OWLClassAssertionAxiom`s contained in this ontology that make the specified `individual` an instance of some class expression.
`Set<OWLClass>`	`getClassesInSignature()` Gets the classes in the signature of this object.
`Set<OWLClass>`	`getClassesInSignature(boolean b)` Deprecated.
`Set<OWLClass>`	`getClassesInSignature(Imports imports)` Gets the classes in the signature and optionally the imports closure.
`Set<OWLDataProperty>`	`getDataPropertiesInSignature()` A convenience method that obtains the data properties that are in the signature of this object
`Set<OWLDataProperty>`	`getDataPropertiesInSignature(boolean b)` Deprecated.
`Set<OWLDataProperty>`	`getDataPropertiesInSignature(Imports imports)` Gets the data properties in the signature and optionally the imports closure.
`Set<OWLDataPropertyAssertionAxiom>`	`getDataPropertyAssertionAxioms(OWLIndividual owlIndividual)` Gets the `OWLDataPropertyAssertionAxiom`s contained in this ontology that have the specified `individual` as the subject of the axiom.
`Set<OWLDataPropertyDomainAxiom>`	`getDataPropertyDomainAxioms(OWLDataProperty owlDataProperty)` Gets the `OWLDataPropertyDomainAxiom`s where the property is equal to the specified property.
`Set<OWLDataPropertyRangeAxiom>`	`getDataPropertyRangeAxioms(OWLDataProperty owlDataProperty)` Gets the `OWLDataPropertyRangeAxiom`s where the property is equal to the specified property.
`Set<OWLSubDataPropertyOfAxiom>`	`getDataSubPropertyAxiomsForSubProperty(OWLDataProperty owlDataProperty)` Gets the `OWLSubDataPropertyOfAxiom`s where the sub-property is equal to the specified property.
`Set<OWLSubDataPropertyOfAxiom>`	`getDataSubPropertyAxiomsForSuperProperty(OWLDataPropertyExpression owlDataPropertyExpression)` Gets the `OWLSubDataPropertyOfAxiom`s where the super-property is equal to the specified property.
`Set<OWLDatatypeDefinitionAxiom>`	`getDatatypeDefinitions(OWLDatatype owlDatatype)` Gets the `OWLDatatypeDefinitionAxiom`s contained in this ontology that provide a definition for the specified datatype.
`Set<OWLDatatype>`	`getDatatypesInSignature()` A convenience method that obtains the datatypes that are in the signature of this object
`Set<OWLDatatype>`	`getDatatypesInSignature(boolean b)` Deprecated.
`Set<OWLDatatype>`	`getDatatypesInSignature(Imports imports)` Gets the datatypes in the signature and optionally the imports closure.
`Set<OWLDeclarationAxiom>`	`getDeclarationAxioms(OWLEntity owlEntity)` Gets the declaration axioms for specified entity.
`Set<OWLDifferentIndividualsAxiom>`	`getDifferentIndividualAxioms(OWLIndividual owlIndividual)` Gets the `OWLDifferentIndividualsAxiom`s contained in this ontology that make the specified `individual` different to some other individual.
`Set<OWLOntology>`	`getDirectImports()` Gets the set of loaded ontologies that this ontology is related to via the directlyImports relation.
`Set<IRI>`	`getDirectImportsDocuments()` Gets the set of document IRIs that are directly imported by this ontology.
`Set<OWLDisjointClassesAxiom>`	`getDisjointClassesAxioms(OWLClass owlClass)` Gets the set of disjoint class axioms that contain the specified class as an operand.
`Set<OWLDisjointDataPropertiesAxiom>`	`getDisjointDataPropertiesAxioms(OWLDataProperty owlDataProperty)` Gets the `OWLDisjointDataPropertiesAxiom`s that make the specified property disjoint with some other data property expression(s).
`Set<OWLDisjointObjectPropertiesAxiom>`	`getDisjointObjectPropertiesAxioms(OWLObjectPropertyExpression owlObjectPropertyExpression)` Gets the `OWLDisjointObjectPropertiesAxiom`s that make the specified property disjoint with some other object property expression(s).
`Set<OWLDisjointUnionAxiom>`	`getDisjointUnionAxioms(OWLClass owlClass)` Gets the set of disjoint union axioms that have the specified class as the named class that is equivalent to the disjoint union of operands.
`Set<OWLEntity>`	`getEntitiesInSignature(IRI iri)`
`Set<OWLEntity>`	`getEntitiesInSignature(IRI iri, boolean b)` Deprecated.
`Set<OWLEntity>`	`getEntitiesInSignature(IRI iri, Imports imports)` Gets the entities in the signature that have the specified IRI.
`Set<OWLEquivalentClassesAxiom>`	`getEquivalentClassesAxioms(OWLClass owlClass)` Gets all of the equivalent axioms in this ontology that contain the specified class as an operand.
`Set<OWLEquivalentDataPropertiesAxiom>`	`getEquivalentDataPropertiesAxioms(OWLDataProperty owlDataProperty)` Gets the `OWLEquivalentDataPropertiesAxiom`s that make the specified property equivalent to some other data property expression(s).
`Set<OWLEquivalentObjectPropertiesAxiom>`	`getEquivalentObjectPropertiesAxioms(OWLObjectPropertyExpression owlObjectPropertyExpression)` Gets the `OWLEquivalentObjectPropertiesAxiom`s that make the specified property equivalent to some other object property expression(s).
`Set<OWLFunctionalDataPropertyAxiom>`	`getFunctionalDataPropertyAxioms(OWLDataPropertyExpression owlDataPropertyExpression)` Gets the `OWLFunctionalDataPropertyAxiom`s contained in this ontology that make the specified data property functional.
`Set<OWLFunctionalObjectPropertyAxiom>`	`getFunctionalObjectPropertyAxioms(OWLObjectPropertyExpression owlObjectPropertyExpression)` Gets the `OWLFunctionalObjectPropertyAxiom`s contained in this ontology that make the specified object property functional.
`Set<OWLClassAxiom>`	`getGeneralClassAxioms()` Gets the set of general axioms in this ontology.
`Set<OWLHasKeyAxiom>`	`getHasKeyAxioms(OWLClass owlClass)` Gets the has key axioms that have the specified class as their subject.
`Set<OWLOntology>`	`getImports()` Gets the set of loaded ontologies that this ontology is related to via the transitive closure of the directlyImports relation. For example, if this ontology imports ontology B, and ontology B imports ontology C, then this method will return the set consisting of ontology B and ontology C.
`Set<OWLOntology>`	`getImportsClosure()` Gets the set of loaded ontologies that this ontology is related to via the reflexive transitive closure of the directlyImports relation as defined in Section 3.4 of the OWL 2 Structural Specification.
`Set<OWLImportsDeclaration>`	`getImportsDeclarations()` Gets the set of imports declarations for this ontology.
`Set<OWLNamedIndividual>`	`getIndividualsInSignature()` A convenience method that obtains the individuals that are in the signature of this object
`Set<OWLNamedIndividual>`	`getIndividualsInSignature(boolean b)` Deprecated.
`Set<OWLNamedIndividual>`	`getIndividualsInSignature(Imports imports)` Gets the named individuals in the signature and optionally the imports closure.
`Set<OWLInverseFunctionalObjectPropertyAxiom>`	`getInverseFunctionalObjectPropertyAxioms(OWLObjectPropertyExpression owlObjectPropertyExpression)` Gets the `OWLInverseFunctionalObjectPropertyAxiom`s contained in this ontology that make the specified object property inverse functional.
`Set<OWLInverseObjectPropertiesAxiom>`	`getInverseObjectPropertyAxioms(OWLObjectPropertyExpression owlObjectPropertyExpression)` Gets the `OWLInverseObjectPropertiesAxiom`s where the specified property is contained in the set returned by `OWLNaryPropertyAxiom.getProperties()` .
`Set<OWLIrreflexiveObjectPropertyAxiom>`	`getIrreflexiveObjectPropertyAxioms(OWLObjectPropertyExpression owlObjectPropertyExpression)` Gets the `OWLIrreflexiveObjectPropertyAxiom`s contained in this ontology that make the specified object property irreflexive.
`int`	`getLogicalAxiomCount()` Gets the number of logical axioms in this collection.
`int`	`getLogicalAxiomCount(boolean b)` Deprecated.
`int`	`getLogicalAxiomCount(Imports imports)` Gets the number of logical axioms in this collection, optionally including the imports closure.
`Set<OWLLogicalAxiom>`	`getLogicalAxioms()` Gets the set of `OWLLogicalAxiom`s contained within this object.
`Set<OWLLogicalAxiom>`	`getLogicalAxioms(boolean b)` Deprecated.
`Set<OWLLogicalAxiom>`	`getLogicalAxioms(Imports imports)` Gets all axioms semantically relevant, i.e., all axioms that are not annotation axioms or declaration axioms.
`Set<OWLNegativeDataPropertyAssertionAxiom>`	`getNegativeDataPropertyAssertionAxioms(OWLIndividual owlIndividual)` Gets the `OWLNegativeDataPropertyAssertionAxiom` s contained in this ontology that have the specified `individual` as the subject of the axiom.
`Set<OWLNegativeObjectPropertyAssertionAxiom>`	`getNegativeObjectPropertyAssertionAxioms(OWLIndividual owlIndividual)` Gets the `OWLNegativeObjectPropertyAssertionAxiom` s contained in this ontology that have the specified `individual` as the subject of the axiom.
`Set<OWLClassExpression>`	`getNestedClassExpressions()` Gets all of the nested (includes top level) class expressions that are used in this object
`Set<OWLObjectProperty>`	`getObjectPropertiesInSignature()` A convenience method that obtains the object properties that are in the signature of this object
`Set<OWLObjectProperty>`	`getObjectPropertiesInSignature(boolean b)` Deprecated.
`Set<OWLObjectProperty>`	`getObjectPropertiesInSignature(Imports imports)` Gets the object properties in the signature and optionally the imports closure.
`Set<OWLObjectPropertyAssertionAxiom>`	`getObjectPropertyAssertionAxioms(OWLIndividual owlIndividual)` Gets the `OWLObjectPropertyAssertionAxiom`s contained in this ontology that have the specified `individual` as the subject of the axiom.
`Set<OWLObjectPropertyDomainAxiom>`	`getObjectPropertyDomainAxioms(OWLObjectPropertyExpression owlObjectPropertyExpression)` Gets the `OWLObjectPropertyDomainAxiom`s where the property is equal to the specified property.
`Set<OWLObjectPropertyRangeAxiom>`	`getObjectPropertyRangeAxioms(OWLObjectPropertyExpression owlObjectPropertyExpression)` Gets the `OWLObjectPropertyRangeAxiom` s where the property is equal to the specified property.
`Set<OWLSubObjectPropertyOfAxiom>`	`getObjectSubPropertyAxiomsForSubProperty(OWLObjectPropertyExpression owlObjectPropertyExpression)` Gets the `OWLSubObjectPropertyOfAxiom` s where the sub-property is equal to the specified property.
`Set<OWLSubObjectPropertyOfAxiom>`	`getObjectSubPropertyAxiomsForSuperProperty(OWLObjectPropertyExpression owlObjectPropertyExpression)` Gets the `OWLSubObjectPropertyOfAxiom` s where the super-property is equal to the specified property.
`OWLOntologyID`	`getOntologyID()` Gets the identity of this ontology (i.e.
`OWLOntologyManager`	`getOWLOntologyManager()` Gets the manager that manages this ontology.
`Set<IRI>`	`getPunnedIRIs(Imports imports)` Calculates the set of IRIs that are used for more than one entity type.
`Set<OWLAxiom>`	`getRBoxAxioms(Imports imports)` Gets the axioms that form the RBox for this ontology, i.e., the ones whose type is in the AxiomType::RBoxAxiomTypes.
`Set<OWLAnonymousIndividual>`	`getReferencedAnonymousIndividuals(boolean b)` Deprecated.
`Set<OWLAnonymousIndividual>`	`getReferencedAnonymousIndividuals(Imports imports)` Gets the referenced anonymous individuals in the signature and optionally the imports closure.
`Set<OWLAxiom>`	`getReferencingAxioms(OWLPrimitive owlPrimitive)` Gets the axioms where the specified `OWLPrimitive` appears in the signature of the axiom. Note that currently signatures contain `OWLEntity` only.
`Set<OWLAxiom>`	`getReferencingAxioms(OWLPrimitive owlPrimitive, boolean b)` Deprecated.
`Set<OWLAxiom>`	`getReferencingAxioms(OWLPrimitive owlPrimitive, Imports imports)` Gets the axioms where the specified `OWLPrimitive` appears in the signature of the axiom. Note that currently signatures contain `OWLEntity` only.
`Set<OWLReflexiveObjectPropertyAxiom>`	`getReflexiveObjectPropertyAxioms(OWLObjectPropertyExpression owlObjectPropertyExpression)` Gets the `OWLReflexiveObjectPropertyAxiom`s contained in this ontology that make the specified object property reflexive.
`Set<OWLSameIndividualAxiom>`	`getSameIndividualAxioms(OWLIndividual owlIndividual)` Gets the `OWLSameIndividualAxiom`s contained in this ontology that make the specified `individual` the same as some other individual.
`Set<OWLEntity>`	`getSignature()` Gets the entities that are in the signature of this ontology.
`Set<OWLEntity>`	`getSignature(Imports imports)` Gets the entities that are in the signature of this ontology.
`Set<OWLSubAnnotationPropertyOfAxiom>`	`getSubAnnotationPropertyOfAxioms(OWLAnnotationProperty owlAnnotationProperty)` Gets the `SubAnnotationPropertyOfAxiom`s where the specified property is the sub-property.
`Set<OWLSubClassOfAxiom>`	`getSubClassAxiomsForSubClass(OWLClass owlClass)` Gets all of the subclass axioms where the left hand side (the subclass) is equal to the specified class.
`Set<OWLSubClassOfAxiom>`	`getSubClassAxiomsForSuperClass(OWLClass owlClass)` Gets all of the subclass axioms where the right hand side (the superclass) is equal to the specified class.
`Set<OWLSymmetricObjectPropertyAxiom>`	`getSymmetricObjectPropertyAxioms(OWLObjectPropertyExpression owlObjectPropertyExpression)` Gets the `OWLSymmetricObjectPropertyAxiom`s contained in this ontology that make the specified object property symmetric.
`Set<OWLAxiom>`	`getTBoxAxioms(Imports imports)` Gets the axioms that form the TBox for this ontology, i.e., the ones whose type is in the AxiomType::TBoxAxiomTypes.
`Set<OWLTransitiveObjectPropertyAxiom>`	`getTransitiveObjectPropertyAxioms(OWLObjectPropertyExpression owlObjectPropertyExpression)` Gets the `OWLTransitiveObjectPropertyAxiom`s contained in this ontology that make the specified object property transitive.
`int`	`hashCode()`
`boolean`	`isAnonymous()` Determines whether or not this ontology is anonymous.
`boolean`	`isBottomEntity()` Determines if this object is either, owl:Nothing (the bottom class), owl:bottomObjectProperty (the bottom object property) , owl:bottomDataProperty (the bottom data property).
`boolean`	`isDeclared(OWLEntity owlEntity)` Determines if this ontology declares an entity i.e.
`boolean`	`isDeclared(OWLEntity owlEntity, Imports imports)` Determines if this ontology or its imports closure declares an entity i.e.
`boolean`	`isEmpty()` Determines if this ontology is empty - an ontology is empty if it does not contain any axioms (i.e.
`boolean`	`isTopEntity()` Determines if this object is either, owl:Thing (the top class), owl:topObjectProperty (the top object property) , owl:topDataProperty (the top data property) or rdfs:Literal (the top datatype).
`void`	`saveOntology()` Saves the ontology.
`void`	`saveOntology(IRI iri)` Saves the ontology, using the specified document IRI to determine where/how the ontology should be saved.
`void`	`saveOntology(OutputStream outputStream)` Saves the ontology, to the specified output stream
`void`	`saveOntology(OWLDocumentFormat owlDocumentFormat)` Saves the ontology in the specified ontology format to its document URI.
`void`	`saveOntology(OWLDocumentFormat owlDocumentFormat, IRI iri)` Saves the ontology to the specified document IRI in the specified ontology format.
`void`	`saveOntology(OWLDocumentFormat owlDocumentFormat, OutputStream outputStream)` Saves the ontology to the specified output stream in the specified ontology format.
`void`	`saveOntology(OWLDocumentFormat owlDocumentFormat, OWLOntologyDocumentTarget owlOntologyDocumentTarget)` Saves the ontology to the specified output target in the specified ontology format.
`void`	`saveOntology(OWLOntologyDocumentTarget owlOntologyDocumentTarget)` Saves the ontology to the specified `OWLOntologyDocumentTarget`.
`void`	`setOWLOntologyManager(OWLOntologyManager owlOntologyManager)` Sets the manager for this ontology.
`String`	`toString()`
`void`	`trimToSize()` Trim the capacity of the axiom indexes.

Methods inherited from class java.lang.Object
getClass, notify, notifyAll, wait, wait, wait

- Constructor Detail
  - ConcurrentOWLOntologyImpl
```
@Inject
public ConcurrentOWLOntologyImpl(@Nonnull
                                         OWLOntology delegate,
                                         @Nonnull
                                         ReadWriteLock readWriteLock)
```
    Constructs a ConcurrentOWLOntology that provides concurrent access to a delegate OWLOntology.
    
    Parameters:
    
    delegate - The delegate OWLOntology.
    
    readWriteLock - The ReadWriteLock that will provide the locking.
    
    Throws:
    
    NullPointerException - if any parameters are null.
- Method Detail
  - trimToSize
```
public void trimToSize()
```
    Description copied from interface: HasTrimToSize
    
    Trim the capacity of the axiom indexes. An application can use this operation to minimize the storage of the index instance.
    
    Specified by:
    
    trimToSize in interface HasTrimToSize
  - accept
```
public void accept(@Nonnull
                   OWLNamedObjectVisitor owlNamedObjectVisitor)
```
    Description copied from interface: OWLOntology
    
    accept for named object visitor
    
    Specified by:
    
    accept in interface OWLOntology
    
    Parameters:
    
    owlNamedObjectVisitor - the visitor
  - accept
```
@Nonnull
public <O> O accept(@Nonnull
                             OWLNamedObjectVisitorEx<O> owlNamedObjectVisitorEx)
```
    Description copied from interface: OWLOntology
    
    Accepts a visitor
    
    Specified by:
    
    accept in interface OWLOntology
    
    Type Parameters:
    
    O - visitor return type
    
    Parameters:
    
    owlNamedObjectVisitorEx - The visitor
    
    Returns:
    
    visitor return value
  - hashCode
```
public int hashCode()
```
    Overrides:
    
    hashCode in class Object
  - equals
```
public boolean equals(Object obj)
```
    Overrides:
    
    equals in class Object
  - getOWLOntologyManager
```
@Nonnull
public OWLOntologyManager getOWLOntologyManager()
```
    Description copied from interface: OWLOntology
    
    Gets the manager that manages this ontology. The manager is used by various methods on OWLOntology to resolve imports
    
    Specified by:
    
    getOWLOntologyManager in interface OWLOntology
    
    Returns:
    
    The manager for this ontology.
  - setOWLOntologyManager
```
public void setOWLOntologyManager(OWLOntologyManager owlOntologyManager)
```
    Description copied from interface: OWLOntology
    
    Sets the manager for this ontology. This method is used when moving ontologies from one manager to another and when removing an ontology form a manager, and should be used by OWLOntologyManager implementations only.
    
    Specified by:
    
    setOWLOntologyManager in interface OWLOntology
    
    Parameters:
    
    owlOntologyManager - the new manager for this ontology
  - getOntologyID
```
@Nonnull
public OWLOntologyID getOntologyID()
```
    Description copied from interface: OWLOntology
    
    Gets the identity of this ontology (i.e. ontology IRI + version IRI).
    
    Specified by:
    
    getOntologyID in interface HasOntologyID
    
    Specified by:
    
    getOntologyID in interface OWLOntology
    
    Returns:
    
    The ID of this ontology.
  - isAnonymous
```
public boolean isAnonymous()
```
    Description copied from interface: OWLOntology
    
    Determines whether or not this ontology is anonymous. An ontology is anonymous if it does not have an ontology IRI. In this case, getOntologyID().getOntologyIRI() will return an Optional.absent.
    
    Specified by:
    
    isAnonymous in interface OWLOntology
    
    Returns:
    
    true if this ontology is anonymous, otherwise false
  - getAnnotations
```
@Nonnull
public Set<OWLAnnotation> getAnnotations()
```
    Description copied from interface: OWLOntology
    
    Gets the annotations on this ontology.
    
    Specified by:
    
    getAnnotations in interface HasAnnotations
    
    Specified by:
    
    getAnnotations in interface OWLOntology
    
    Returns:
    
    A set of annotations on this ontology. The set returned will be a copy - modifying the set will have no effect on the annotations in this ontology, similarly, any changes that affect the annotations on this ontology will not change the returned set.
  - getDirectImportsDocuments
```
@Nonnull
public Set<IRI> getDirectImportsDocuments()
```
    Description copied from interface: OWLOntology
    
    Gets the set of document IRIs that are directly imported by this ontology. This corresponds to the IRIs defined by the directlyImportsDocument association as discussed in Section 3.4 of the OWL 2 Structural specification.
    
    Specified by:
    
    getDirectImportsDocuments in interface OWLOntology
    
    Returns:
    
    The set of directlyImportsDocument IRIs.
  - getDirectImports
```
@Nonnull
public Set<OWLOntology> getDirectImports()
```
    Description copied from interface: OWLOntology
    
    Gets the set of loaded ontologies that this ontology is related to via the directlyImports relation. See Section 3.4 of the OWL 2 specification for the definition of the directlyImports relation.
    Note that there may be fewer ontologies in the set returned by this method than there are IRIs in the set returned by the OWLOntology.getDirectImportsDocuments() method. This will be the case if some of the ontologies that are directly imported by this ontology are not loaded for what ever reason.
    
    Specified by:
    
    getDirectImports in interface HasDirectImports
    
    Specified by:
    
    getDirectImports in interface OWLOntology
    
    Returns:
    
    A set of ontologies such that for this ontology O, and each ontology O' in the set, (O, O') is in the directlyImports relation.
  - getImports
```
@Nonnull
public Set<OWLOntology> getImports()
```
    Description copied from interface: OWLOntology
    
    Gets the set of loaded ontologies that this ontology is related to via the transitive closure of the directlyImports relation.
    For example, if this ontology imports ontology B, and ontology B imports ontology C, then this method will return the set consisting of ontology B and ontology C.
    
    Specified by:
    
    getImports in interface OWLOntology
    
    Returns:
    
    The set of ontologies that this ontology is related to via the transitive closure of the directlyImports relation. The set that is returned is a copy - it will not be updated if the ontology changes. It is therefore safe to apply changes to this ontology while iterating over this set.
  - getImportsClosure
```
@Nonnull
public Set<OWLOntology> getImportsClosure()
```
    Description copied from interface: OWLOntology
    
    Gets the set of loaded ontologies that this ontology is related to via the reflexive transitive closure of the directlyImports relation as defined in Section 3.4 of the OWL 2 Structural Specification. (i.e. The set returned includes all ontologies returned by the OWLOntology.getImports() method plus this ontology.)
    For example, if this ontology imports ontology B, and ontology B imports ontology C, then this method will return the set consisting of this ontology, ontology B and ontology C.
    
    Specified by:
    
    getImportsClosure in interface HasImportsClosure
    
    Specified by:
    
    getImportsClosure in interface OWLOntology
    
    Returns:
    
    The set of ontologies in the reflexive transitive closure of the directlyImports relation.
  - getImportsDeclarations
```
@Nonnull
public Set<OWLImportsDeclaration> getImportsDeclarations()
```
    Description copied from interface: OWLOntology
    
    Gets the set of imports declarations for this ontology. The set returned represents the set of IRIs that correspond to the set of IRIs in an ontology's directlyImportsDocuments (see Section 3 in the OWL 2 structural specification).
    
    Specified by:
    
    getImportsDeclarations in interface OWLOntology
    
    Returns:
    
    The set of imports declarations that correspond to the set of ontology document IRIs that are directly imported by this ontology. The set that is returned is a copy - it will not be updated if the ontology changes. It is therefore safe to apply changes to this ontology while iterating over this set.
  - isEmpty
```
public boolean isEmpty()
```
    Description copied from interface: OWLOntology
    
    Determines if this ontology is empty - an ontology is empty if it does not contain any axioms (i.e. HasAxioms.getAxioms() returns the empty set), and it does not have any annotations (i.e. OWLOntology.getAnnotations() returns the empty set).
    
    Specified by:
    
    isEmpty in interface OWLOntology
    
    Returns:
    
    true if the ontology is empty, otherwise false.
  - getTBoxAxioms
```
@Nonnull
public Set<OWLAxiom> getTBoxAxioms(@Nonnull
                                            Imports imports)
```
    Description copied from interface: OWLOntology
    
    Gets the axioms that form the TBox for this ontology, i.e., the ones whose type is in the AxiomType::TBoxAxiomTypes.
    
    Specified by:
    
    getTBoxAxioms in interface OWLOntology
    
    Parameters:
    
    imports - if INCLUDED, the imports closure is included.
    
    Returns:
    
    A set containing the axioms which are of the specified type. The set that is returned is a copy of the axioms in the ontology (and its imports closure) - it will not be updated if the ontology changes.
  - getABoxAxioms
```
@Nonnull
public Set<OWLAxiom> getABoxAxioms(@Nonnull
                                            Imports imports)
```
    Description copied from interface: OWLOntology
    
    Gets the axioms that form the ABox for this ontology, i.e., the ones whose type is in the AxiomType::ABoxAxiomTypes.
    
    Specified by:
    
    getABoxAxioms in interface OWLOntology
    
    Parameters:
    
    imports - if INCLUDED, the imports closure is included.
    
    Returns:
    
    A set containing the axioms which are of the specified type. The set that is returned is a copy of the axioms in the ontology (and its imports closure) - it will not be updated if the ontology changes.
  - getRBoxAxioms
```
@Nonnull
public Set<OWLAxiom> getRBoxAxioms(@Nonnull
                                            Imports imports)
```
    Description copied from interface: OWLOntology
    
    Gets the axioms that form the RBox for this ontology, i.e., the ones whose type is in the AxiomType::RBoxAxiomTypes.
    
    Specified by:
    
    getRBoxAxioms in interface OWLOntology
    
    Parameters:
    
    imports - if INCLUDED, the imports closure is included.
    
    Returns:
    
    A set containing the axioms which are of the specified type. The set that is returned is a copy of the axioms in the ontology (and its imports closure) - it will not be updated if the ontology changes.
  - getGeneralClassAxioms
```
@Nonnull
public Set<OWLClassAxiom> getGeneralClassAxioms()
```
    Description copied from interface: OWLOntology
    Gets the set of general axioms in this ontology. This includes:
    - Subclass axioms that have a complex class as the subclass
    - Equivalent class axioms that don't contain any named classes ( OWLClasses)
    - Disjoint class axioms that don't contain any named classes ( OWLClasses)
    Specified by:
    
    getGeneralClassAxioms in interface OWLOntology
    
    Returns:
    
    The set that is returned is a copy of the axioms in the ontology - it will not be updated if the ontology changes. It is therefore safe to apply changes to this ontology while iterating over this set.
  - getSignature
```
@Nonnull
public Set<OWLEntity> getSignature()
```
    Description copied from interface: OWLOntology
    
    Gets the entities that are in the signature of this ontology. The signature of an ontology is the set of entities that are used to build axioms and annotations in the ontology. (See The OWL 2 Structural Specification)
    
    Specified by:
    
    getSignature in interface HasSignature
    
    Specified by:
    
    getSignature in interface OWLOntology
    
    Returns:
    
    A set of OWLEntity objects. The set that is returned is a copy - it will not be updated if the ontology changes. It is therefore safe to apply changes to this ontology while iterating over this set.
    
    See Also:
    
    HasClassesInSignature.getClassesInSignature(), HasObjectPropertiesInSignature.getObjectPropertiesInSignature(), HasDataPropertiesInSignature.getDataPropertiesInSignature(), HasIndividualsInSignature.getIndividualsInSignature()
  - getSignature
```
@Nonnull
public Set<OWLEntity> getSignature(@Nonnull
                                            Imports imports)
```
    Description copied from interface: OWLOntology
    
    Gets the entities that are in the signature of this ontology. The signature of an ontology is the set of entities that are used to build axioms and annotations in the ontology. (See The OWL 2 Structural Specification)
    
    Specified by:
    
    getSignature in interface OWLOntology
    
    Parameters:
    
    imports - if INCLUDED, the imports closure is included.
    
    Returns:
    
    A set of OWLEntity objects. The set that is returned is a copy - it will not be updated if the ontology changes. It is therefore safe to apply changes to this ontology while iterating over this set.
    
    See Also:
    
    HasClassesInSignature.getClassesInSignature(), HasObjectPropertiesInSignature.getObjectPropertiesInSignature(), HasDataPropertiesInSignature.getDataPropertiesInSignature(), HasIndividualsInSignature.getIndividualsInSignature()
  - isDeclared
```
public boolean isDeclared(@Nonnull
                          OWLEntity owlEntity)
```
    Description copied from interface: OWLOntology
    
    Determines if this ontology declares an entity i.e. it contains a declaration axiom for the specified entity.
    
    Specified by:
    
    isDeclared in interface OWLOntology
    
    Parameters:
    
    owlEntity - The entity to be tested for
    
    Returns:
    
    true if the ontology contains a declaration for the specified entity, otherwise false.
  - isDeclared
```
public boolean isDeclared(@Nonnull
                          OWLEntity owlEntity,
                          @Nonnull
                          Imports imports)
```
    Description copied from interface: OWLOntology
    
    Determines if this ontology or its imports closure declares an entity i.e. contains a declaration axiom for the specified entity.
    
    Specified by:
    
    isDeclared in interface OWLOntology
    
    Parameters:
    
    owlEntity - The entity to be tested for
    
    imports - if INCLUDED, the imports closure is included.
    
    Returns:
    
    true if the ontology or its imports closure contains a declaration for the specified entity, otherwise false.
  - saveOntology
```
public void saveOntology()
                  throws OWLOntologyStorageException
```
    Description copied from interface: OWLOntology
    
    Saves the ontology. The ontology will be saved to the location that it was loaded from, or if it was created programmatically, it will be saved to the location specified by an ontology IRI mapper at creation time. The ontology will be saved in the same format which it was loaded from, or the default ontology format if the ontology was created programmatically.
    
    Specified by:
    
    saveOntology in interface OWLOntology
    
    Throws:
    
    OWLOntologyStorageException - An exception will be thrown if there is a problem with saving the ontology, or the ontology can't be saved in the format it was loaded from.
  - saveOntology
```
public void saveOntology(@Nonnull
                         IRI iri)
                  throws OWLOntologyStorageException
```
    Description copied from interface: OWLOntology
    
    Saves the ontology, using the specified document IRI to determine where/how the ontology should be saved.
    
    Specified by:
    
    saveOntology in interface OWLOntology
    
    Parameters:
    
    iri - The document IRI where the ontology should be saved to
    
    Throws:
    
    OWLOntologyStorageException - If the ontology cannot be saved
  - saveOntology
```
public void saveOntology(@Nonnull
                         OutputStream outputStream)
                  throws OWLOntologyStorageException
```
    Description copied from interface: OWLOntology
    
    Saves the ontology, to the specified output stream
    
    Specified by:
    
    saveOntology in interface OWLOntology
    
    Parameters:
    
    outputStream - The output stream where the ontology will be saved to
    
    Throws:
    
    OWLOntologyStorageException - If there was a problem saving this ontology to the specified output stream
  - saveOntology
```
public void saveOntology(@Nonnull
                         OWLDocumentFormat owlDocumentFormat)
                  throws OWLOntologyStorageException
```
    Description copied from interface: OWLOntology
    
    Saves the ontology in the specified ontology format to its document URI.
    
    Specified by:
    
    saveOntology in interface OWLOntology
    
    Parameters:
    
    owlDocumentFormat - The format in which the ontology should be saved.
    
    Throws:
    
    OWLOntologyStorageException - If the ontology cannot be saved.
  - saveOntology
```
public void saveOntology(@Nonnull
                         OWLDocumentFormat owlDocumentFormat,
                         @Nonnull
                         IRI iri)
                  throws OWLOntologyStorageException
```
    Description copied from interface: OWLOntology
    
    Saves the ontology to the specified document IRI in the specified ontology format.
    
    Specified by:
    
    saveOntology in interface OWLOntology
    
    Parameters:
    
    owlDocumentFormat - The format in which to save the ontology
    
    iri - The document IRI where the ontology should be saved to
    
    Throws:
    
    OWLOntologyStorageException - If the ontology could not be saved.
  - saveOntology
```
public void saveOntology(@Nonnull
                         OWLDocumentFormat owlDocumentFormat,
                         @Nonnull
                         OutputStream outputStream)
                  throws OWLOntologyStorageException
```
    Description copied from interface: OWLOntology
    
    Saves the ontology to the specified output stream in the specified ontology format.
    
    Specified by:
    
    saveOntology in interface OWLOntology
    
    Parameters:
    
    owlDocumentFormat - The format in which to save the ontology
    
    outputStream - The output stream where the ontology will be saved to.
    
    Throws:
    
    OWLOntologyStorageException - If the ontology could not be saved.
  - saveOntology
```
public void saveOntology(@Nonnull
                         OWLOntologyDocumentTarget owlOntologyDocumentTarget)
                  throws OWLOntologyStorageException
```
    Description copied from interface: OWLOntology
    
    Saves the ontology to the specified OWLOntologyDocumentTarget.
    
    Specified by:
    
    saveOntology in interface OWLOntology
    
    Parameters:
    
    owlOntologyDocumentTarget - The output target where the ontology will be saved to.
    
    Throws:
    
    OWLOntologyStorageException - If the ontology could not be saved.
  - saveOntology
```
public void saveOntology(@Nonnull
                         OWLDocumentFormat owlDocumentFormat,
                         @Nonnull
                         OWLOntologyDocumentTarget owlOntologyDocumentTarget)
                  throws OWLOntologyStorageException
```
    Description copied from interface: OWLOntology
    
    Saves the ontology to the specified output target in the specified ontology format.
    
    Specified by:
    
    saveOntology in interface OWLOntology
    
    Parameters:
    
    owlDocumentFormat - The output format in which to save the ontology
    
    owlOntologyDocumentTarget - The output target where the ontology will be saved to
    
    Throws:
    
    OWLOntologyStorageException - If the ontology could not be saved.
  - getNestedClassExpressions
```
@Nonnull
public Set<OWLClassExpression> getNestedClassExpressions()
```
    Description copied from interface: OWLObject
    
    Gets all of the nested (includes top level) class expressions that are used in this object
    
    Specified by:
    
    getNestedClassExpressions in interface OWLObject
    
    Returns:
    
    A set of OWLClassExpressions that represent the nested class expressions used in this object.
  - accept
```
public void accept(@Nonnull
                   OWLObjectVisitor owlObjectVisitor)
```
    Description copied from interface: OWLObject
    
    Accepts a visitor
    
    Specified by:
    
    accept in interface OWLObject
    
    Parameters:
    
    owlObjectVisitor - The visitor
  - accept
```
@Nonnull
public <O> O accept(@Nonnull
                             OWLObjectVisitorEx<O> owlObjectVisitorEx)
```
    Description copied from interface: OWLObject
    
    Accepts a visitor
    
    Specified by:
    
    accept in interface OWLObject
    
    Type Parameters:
    
    O - visitor return type
    
    Parameters:
    
    owlObjectVisitorEx - The visitor
    
    Returns:
    
    visitor value
  - isTopEntity
```
public boolean isTopEntity()
```
    Description copied from interface: OWLObject
    
    Determines if this object is either, owl:Thing (the top class), owl:topObjectProperty (the top object property) , owl:topDataProperty (the top data property) or rdfs:Literal (the top datatype).
    
    Specified by:
    
    isTopEntity in interface OWLObject
    
    Returns:
    
    true if this object corresponds to one of the above entities.
  - isBottomEntity
```
public boolean isBottomEntity()
```
    Description copied from interface: OWLObject
    
    Determines if this object is either, owl:Nothing (the bottom class), owl:bottomObjectProperty (the bottom object property) , owl:bottomDataProperty (the bottom data property).
    
    Specified by:
    
    isBottomEntity in interface OWLObject
    
    Returns:
    
    true if this object corresponds to one of the above entities.
  - toString
```
@Nonnull
public String toString()
```
    Specified by:
    
    toString in interface OWLObject
    
    Overrides:
    
    toString in class Object
  - compareTo
```
public int compareTo(OWLObject o)
```
    Specified by:
    
    compareTo in interface Comparable<OWLObject>
  - containsEntityInSignature
```
public boolean containsEntityInSignature(@Nonnull
                                         OWLEntity owlEntity)
```
    Description copied from interface: HasContainsEntityInSignature
    
    Determines if the signature of this object contains the specified entity.
    
    Specified by:
    
    containsEntityInSignature in interface HasContainsEntityInSignature
    
    Parameters:
    
    owlEntity - The entity
    
    Returns:
    
    true if the signature of this object contains owlEntity, otherwise false
  - getAnonymousIndividuals
```
@Nonnull
public Set<OWLAnonymousIndividual> getAnonymousIndividuals()
```
    Description copied from interface: HasAnonymousIndividuals
    
    Gets the anonymous individuals occurring in this object. The set is a copy, changes are not reflected back.
    
    Specified by:
    
    getAnonymousIndividuals in interface HasAnonymousIndividuals
    
    Returns:
    
    A set of anonymous individuals
  - getClassesInSignature
```
@Nonnull
public Set<OWLClass> getClassesInSignature()
```
    Description copied from interface: HasClassesInSignature
    
    Gets the classes in the signature of this object.
    
    Specified by:
    
    getClassesInSignature in interface HasClassesInSignature
    
    Returns:
    
    A set containing the classes that are in the signature of this object. The set is a subset of the signature, and is not backed by the signature; it is a modifiable collection and changes are not reflected by the signature.
  - getObjectPropertiesInSignature
```
@Nonnull
public Set<OWLObjectProperty> getObjectPropertiesInSignature()
```
    Description copied from interface: HasObjectPropertiesInSignature
    
    A convenience method that obtains the object properties that are in the signature of this object
    
    Specified by:
    
    getObjectPropertiesInSignature in interface HasObjectPropertiesInSignature
    
    Returns:
    
    A set containing the object properties that are in the signature of this object.The set is a subset of the signature, and is not backed by the signature; it is a modifiable collection and changes are not reflected by the signature.
  - getDataPropertiesInSignature
```
@Nonnull
public Set<OWLDataProperty> getDataPropertiesInSignature()
```
    Description copied from interface: HasDataPropertiesInSignature
    
    A convenience method that obtains the data properties that are in the signature of this object
    
    Specified by:
    
    getDataPropertiesInSignature in interface HasDataPropertiesInSignature
    
    Returns:
    
    A set containing the data properties that are in the signature of this object.The set is a subset of the signature, and is not backed by the signature; it is a modifiable collection and changes are not reflected by the signature.
  - getIndividualsInSignature
```
@Nonnull
public Set<OWLNamedIndividual> getIndividualsInSignature()
```
    Description copied from interface: HasIndividualsInSignature
    
    A convenience method that obtains the individuals that are in the signature of this object
    
    Specified by:
    
    getIndividualsInSignature in interface HasIndividualsInSignature
    
    Returns:
    
    A set containing the individuals that are in the signature of this object.The set is a subset of the signature, and is not backed by the signature; it is a modifiable collection and changes are not reflected by the signature.
  - getDatatypesInSignature
```
@Nonnull
public Set<OWLDatatype> getDatatypesInSignature()
```
    Description copied from interface: HasDatatypesInSignature
    
    A convenience method that obtains the datatypes that are in the signature of this object
    
    Specified by:
    
    getDatatypesInSignature in interface HasDatatypesInSignature
    
    Returns:
    
    A set containing the datatypes that are in the signature of this object.The set is a subset of the signature, and is not backed by the signature; it is a modifiable collection and changes are not reflected by the signature.
  - getAnnotationPropertiesInSignature
```
@Nonnull
public Set<OWLAnnotationProperty> getAnnotationPropertiesInSignature()
```
    Description copied from interface: HasAnnotationPropertiesInSignature
    
    A convenience method that obtains the annotation properties that are in the signature of this object
    
    Specified by:
    
    getAnnotationPropertiesInSignature in interface HasAnnotationPropertiesInSignature
    
    Returns:
    
    A set containing the annotation properties that are in the signature of this object.The set is a subset of the signature, and is not backed by the signature; it is a modifiable collection and changes are not reflected by the signature.
  - getAxioms
```
@Nonnull
public Set<OWLAxiom> getAxioms(@Nonnull
                                        Imports imports)
```
    Specified by:
    
    getAxioms in interface OWLAxiomCollection
    
    Parameters:
    
    imports - if INCLUDED, include imports closure.
    
    Returns:
    
    All of the axioms in this collection, and optionally in the import closure. The set that is returned is a copy of the data.
  - getAxiomCount
```
public int getAxiomCount(@Nonnull
                         Imports imports)
```
    Specified by:
    
    getAxiomCount in interface OWLAxiomCollection
    
    Parameters:
    
    imports - if INCLUDED, include imports closure.
    
    Returns:
    
    The number of axioms in this ontology, and optionally in the imports closure.
  - getLogicalAxioms
```
@Nonnull
public Set<OWLLogicalAxiom> getLogicalAxioms(@Nonnull
                                                      Imports imports)
```
    Description copied from interface: OWLAxiomCollection
    
    Gets all axioms semantically relevant, i.e., all axioms that are not annotation axioms or declaration axioms.
    
    Specified by:
    
    getLogicalAxioms in interface OWLAxiomCollection
    
    Parameters:
    
    imports - if INCLUDED, include imports closure.
    
    Returns:
    
    A set of axioms which are of type OWLLogicalAxiom, optionally including the imports closure. The set that is returned is a copy of the data.
  - getLogicalAxiomCount
```
public int getLogicalAxiomCount(@Nonnull
                                Imports imports)
```
    Description copied from interface: OWLAxiomCollection
    
    Gets the number of logical axioms in this collection, optionally including the imports closure.
    
    Specified by:
    
    getLogicalAxiomCount in interface OWLAxiomCollection
    
    Parameters:
    
    imports - if INCLUDED, include imports closure.
    
    Returns:
    
    The number of axioms in this collection, optionally including the imports closure.
  - getAxioms
```
@Nonnull
public <T extends OWLAxiom> Set<T> getAxioms(@Nonnull
                                                      AxiomType<T> axiomType,
                                                      @Nonnull
                                                      Imports imports)
```
    Description copied from interface: OWLAxiomCollection
    
    Gets all axioms of the specified type.
    
    Specified by:
    
    getAxioms in interface OWLAxiomCollection
    
    Type Parameters:
    
    T - axiom type
    
    Parameters:
    
    axiomType - The type of axioms to be retrived.
    
    imports - if INCLUDED, include imports closure.
    
    Returns:
    
    all axioms of the specified type. The set is a copy of the data.
  - getAxiomCount
```
public <T extends OWLAxiom> int getAxiomCount(@Nonnull
                                              AxiomType<T> axiomType,
                                              @Nonnull
                                              Imports imports)
```
    Description copied from interface: OWLAxiomCollection
    
    Gets the axiom count of a specific type of axiom, optionally including the imports closure.
    
    Specified by:
    
    getAxiomCount in interface OWLAxiomCollection
    
    Type Parameters:
    
    T - axiom type
    
    Parameters:
    
    axiomType - The type of axiom to count
    
    imports - if INCLUDED, include imports closure.
    
    Returns:
    
    The number of the specified types of axioms in this collection
  - containsAxiom
```
public boolean containsAxiom(@Nonnull
                             OWLAxiom owlAxiom,
                             @Nonnull
                             Imports imports,
                             @Nonnull
                             AxiomAnnotations axiomAnnotations)
```
    Description copied from interface: OWLAxiomCollection
    
    Determines if this ontology contains the specified axiom, optionally including the imports closure.
    
    Specified by:
    
    containsAxiom in interface OWLAxiomCollection
    
    Parameters:
    
    owlAxiom - The axiom to search.
    
    imports - if INCLUDED, include imports closure.
    
    axiomAnnotations - if IGNORE_ANNOTATIONS, annotations are ignored when searching for the axiom. For example, if the collection contains SubClassOf(Annotation(p V) A B) then this method will return true if the ontology contains SubClassOf(A B) or SubClassOf(Annotation(q S) A B) for any annotation property q and any annotation value S.
    
    Returns:
    
    true if the ontology contains the specified axiom.
  - getAxiomsIgnoreAnnotations
```
@Nonnull
public Set<OWLAxiom> getAxiomsIgnoreAnnotations(@Nonnull
                                                         OWLAxiom owlAxiom,
                                                         @Nonnull
                                                         Imports imports)
```
    Description copied from interface: OWLAxiomCollection
    
    Gets the set of axioms contained in this collection that have the same "logical structure" as the specified axiom; i.e., all axioms that equal the specified axiom, when ignoring annotations. Optionally the imports closure is included.
    
    Specified by:
    
    getAxiomsIgnoreAnnotations in interface OWLAxiomCollection
    
    Parameters:
    
    owlAxiom - The axiom that the returned axioms must equal, ignoring annotations.
    
    imports - if INCLUDED, include imports closure.
    
    Returns:
    
    The set of axioms such that for any two axioms, axiomA and axiomB in the set, axiomA.getAxiomWithoutAnnotations() is equal to axiomB.getAxiomWithoutAnnotations(). The specified axiom will be contained in the set.
  - getReferencingAxioms
```
@Nonnull
public Set<OWLAxiom> getReferencingAxioms(@Nonnull
                                                   OWLPrimitive owlPrimitive,
                                                   @Nonnull
                                                   Imports imports)
```
    Description copied from interface: OWLAxiomCollection
    
    Gets the axioms where the specified OWLPrimitive appears in the signature of the axiom.
    Note that currently signatures contain OWLEntity only. This method accepts OWLPrimitive so that also anonymous individuals, literals, IRIs and annotation values can be passed in, although they are not included in the axioms' signatures.
    
    Specified by:
    
    getReferencingAxioms in interface OWLAxiomCollection
    
    Parameters:
    
    owlPrimitive - The entity that should be directly referred to by all axioms in the results set.
    
    imports - if INCLUDED, include imports closure.
    
    Returns:
    
    All axioms referencing the entity. The set is a copy of the data.
  - getAxioms
```
@Nonnull
public Set<OWLClassAxiom> getAxioms(@Nonnull
                                             OWLClass owlClass,
                                             @Nonnull
                                             Imports imports)
```
    Description copied from interface: OWLAxiomCollection
    
    Gets the axioms that form the definition/description of a class.
    Specified by:
    
    getAxioms in interface OWLAxiomCollection
    
    Parameters:
    
    owlClass - The class whose describing axioms are to be retrieved.
    
    imports - if INCLUDED, include imports closure.
    
    Returns:
    A set of class axioms that describe the class. This set includes
    
    Subclass axioms where the subclass is equal to the specified class
    
    Equivalent class axioms where the specified class is an operand in the equivalent class axiom
    
    Disjoint class axioms where the specified class is an operand in the disjoint class axiom
    
    Disjoint union axioms, where the specified class is the named class that is equivalent to the disjoint union
    
    The returned set is a copy of the data.
  - getAxioms
```
@Nonnull
public Set<OWLObjectPropertyAxiom> getAxioms(@Nonnull
                                                      OWLObjectPropertyExpression owlObjectPropertyExpression,
                                                      @Nonnull
                                                      Imports imports)
```
    Description copied from interface: OWLAxiomCollection
    
    Gets the axioms that form the definition/description of an object property.
    Specified by:
    
    getAxioms in interface OWLAxiomCollection
    
    Parameters:
    
    owlObjectPropertyExpression - The property whose defining axioms are to be retrieved.
    
    imports - if INCLUDED, include imports closure.
    
    Returns:
    A set of object property axioms that includes
    
    Sub-property axioms where the sub property is the specified property
    
    Equivalent property axioms where the axiom contains the specified property
    
    Equivalent property axioms that contain the inverse of the specified property
    
    Disjoint property axioms that contain the specified property
    
    Domain axioms that specify a domain of the specified property
    
    Range axioms that specify a range of the specified property
    
    Any property characteristic axiom (i.e. Functional, Symmetric, Reflexive etc.) whose subject is the specified property
    
    Inverse properties axioms that contain the specified property
    
    The set that is returned is a copy of the data.
  - getAxioms
```
@Nonnull
public Set<OWLDataPropertyAxiom> getAxioms(@Nonnull
                                                    OWLDataProperty owlDataProperty,
                                                    @Nonnull
                                                    Imports imports)
```
    Description copied from interface: OWLAxiomCollection
    
    Gets the axioms that form the definition/description of a data property.
    Specified by:
    
    getAxioms in interface OWLAxiomCollection
    
    Parameters:
    
    owlDataProperty - The property whose defining axioms are to be retrieved.
    
    imports - if INCLUDED, include imports closure.
    
    Returns:
    A set of data property axioms that includes
    
    Sub-property axioms where the sub property is the specified property
    
    Equivalent property axioms where the axiom contains the specified property
    
    Disjoint property axioms that contain the specified property
    
    Domain axioms that specify a domain of the specified property
    
    Range axioms that specify a range of the specified property
    
    Any property characteristic axiom (i.e. Functional, Symmetric, Reflexive etc.) whose subject is the specified property
    
    The set is a copy of the data.
  - getAxioms
```
@Nonnull
public Set<OWLIndividualAxiom> getAxioms(@Nonnull
                                                  OWLIndividual owlIndividual,
                                                  @Nonnull
                                                  Imports imports)
```
    Description copied from interface: OWLAxiomCollection
    
    Gets the axioms that form the definition/description of an individual.
    Specified by:
    
    getAxioms in interface OWLAxiomCollection
    
    Parameters:
    
    owlIndividual - The individual whose defining axioms are to be retrieved.
    
    imports - if INCLUDED, include imports closure.
    
    Returns:
    A set of individual axioms that includes
    
    Individual type assertions that assert the type of the specified individual
    
    Same individuals axioms that contain the specified individual
    
    Different individuals axioms that contain the specified individual
    
    Object property assertion axioms whose subject is the specified individual
    
    Data property assertion axioms whose subject is the specified individual
    
    Negative object property assertion axioms whose subject is the specified individual
    
    Negative data property assertion axioms whose subject is the specified individual
    
    The set is a copy of the data.
  - getAxioms
```
@Nonnull
public Set<OWLAnnotationAxiom> getAxioms(@Nonnull
                                                  OWLAnnotationProperty owlAnnotationProperty,
                                                  @Nonnull
                                                  Imports imports)
```
    Description copied from interface: OWLAxiomCollection
    
    Gets the axioms that form the definition/description of an annotation property.
    Specified by:
    
    getAxioms in interface OWLAxiomCollection
    
    Parameters:
    
    owlAnnotationProperty - The property whose definition axioms are to be retrieved
    
    imports - if INCLUDED, include imports closure.
    
    Returns:
    A set of axioms that includes
    
    Annotation subpropertyOf axioms where the specified property is the sub property
    
    Annotation property domain axioms that specify a domain for the specified property
    
    Annotation property range axioms that specify a range for the specified property
    
    The set is a copy of the data.
  - getAxioms
```
@Nonnull
public Set<OWLDatatypeDefinitionAxiom> getAxioms(@Nonnull
                                                          OWLDatatype owlDatatype,
                                                          @Nonnull
                                                          Imports imports)
```
    Description copied from interface: OWLAxiomCollection
    
    Gets the datatype definition axioms for the specified datatype.
    
    Specified by:
    
    getAxioms in interface OWLAxiomCollection
    
    Parameters:
    
    owlDatatype - The datatype
    
    imports - if INCLUDED, include imports closure.
    
    Returns:
    
    The set of datatype definition axioms for the specified datatype. The set is a copy of the data.
  - getAxioms
```
@Nonnull
public Set<OWLAxiom> getAxioms()
```
    Description copied from interface: HasAxioms
    
    Gets the OWLAxioms contained in this object.
    
    Specified by:
    
    getAxioms in interface HasAxioms
    
    Returns:
    
    The set of OWLAxioms contained in this object. Changes are not reflected back.
  - getLogicalAxioms
```
@Nonnull
public Set<OWLLogicalAxiom> getLogicalAxioms()
```
    Description copied from interface: HasLogicalAxioms
    
    Gets the set of OWLLogicalAxioms contained within this object.
    
    Specified by:
    
    getLogicalAxioms in interface HasLogicalAxioms
    
    Returns:
    
    A set of OWLLogicalAxioms that are contained within this object. Changes are not reflected back.
  - getAxioms
```
@Nonnull
public <T extends OWLAxiom> Set<T> getAxioms(@Nonnull
                                                      AxiomType<T> axiomType)
```
    Description copied from interface: HasAxiomsByType
    
    Gets the axioms which are of the specified type.
    
    Specified by:
    
    getAxioms in interface HasAxiomsByType
    
    Type Parameters:
    
    T - axiom type
    
    Parameters:
    
    axiomType - The type of axioms to be retrieved.
    
    Returns:
    
    A set containing the axioms which are of the specified type. The set that is returned is a copy of the axioms in this object. Modifications to the returned set will not be reflected in this object.
  - containsAxiom
```
public boolean containsAxiom(@Nonnull
                             OWLAxiom owlAxiom)
```
    Description copied from interface: HasContainsAxiom
    
    Determines whether or not this object contains a particular OWLAxiom.
    
    Specified by:
    
    containsAxiom in interface HasContainsAxiom
    
    Parameters:
    
    owlAxiom - The OWLAxiom to test for.
    
    Returns:
    
    true if this object contains axiom, otherwise false.
  - getAxioms
```
@Nonnull
 @Deprecated
public Set<OWLAxiom> getAxioms(boolean b)
```
    Deprecated.
    
    Specified by:
    
    getAxioms in interface OWLAxiomCollectionBooleanArgs
    
    Parameters:
    
    b - true if imports are included.
    
    Returns:
    
    All of the axioms in this collection. The set is a copy of the data.
  - getAxiomCount
```
@Deprecated
public int getAxiomCount(boolean b)
```
    Deprecated.
    
    Specified by:
    
    getAxiomCount in interface OWLAxiomCollectionBooleanArgs
    
    Parameters:
    
    b - if true, include imports closure.
    
    Returns:
    
    The number of axioms in this ontology, and optionally in the imports closure.
  - getLogicalAxioms
```
@Deprecated
 @Nonnull
public Set<OWLLogicalAxiom> getLogicalAxioms(boolean b)
```
    Deprecated.
    
    Description copied from interface: OWLAxiomCollectionBooleanArgs
    
    Gets all axioms semantically relevant, i.e., all axioms that are not annotation axioms or declaration axioms.
    
    Specified by:
    
    getLogicalAxioms in interface OWLAxiomCollectionBooleanArgs
    
    Parameters:
    
    b - if true, include imports closure.
    
    Returns:
    
    A set of axioms which are of type OWLLogicalAxiom, optionally including the imports closure. The set that is returned is a copy of the data.
  - getLogicalAxiomCount
```
@Deprecated
public int getLogicalAxiomCount(boolean b)
```
    Deprecated.
    
    Description copied from interface: OWLAxiomCollectionBooleanArgs
    
    Gets the number of logical axioms in this collection, optionally including the imports closure.
    
    Specified by:
    
    getLogicalAxiomCount in interface OWLAxiomCollectionBooleanArgs
    
    Parameters:
    
    b - if true, include imports closure.
    
    Returns:
    
    The number of axioms in this collection, optionally including the imports closure.
  - getAxioms
```
@Deprecated
 @Nonnull
public <T extends OWLAxiom> Set<T> getAxioms(@Nonnull
                                                                   AxiomType<T> axiomType,
                                                                   boolean b)
```
    Deprecated.
    
    Description copied from interface: OWLAxiomCollectionBooleanArgs
    
    Gets all axioms of the specified type.
    
    Specified by:
    
    getAxioms in interface OWLAxiomCollectionBooleanArgs
    
    Type Parameters:
    
    T - axiom type
    
    Parameters:
    
    axiomType - The type of axioms to be retrived.
    
    b - if true, include imports closure.
    
    Returns:
    
    all axioms of the specified type. The set is a copy of the data.
  - getAxiomCount
```
@Deprecated
public <T extends OWLAxiom> int getAxiomCount(@Nonnull
                                                          AxiomType<T> axiomType,
                                                          boolean b)
```
    Deprecated.
    
    Description copied from interface: OWLAxiomCollectionBooleanArgs
    
    Gets the axiom count of a specific type of axiom, optionally including the imports closure.
    
    Specified by:
    
    getAxiomCount in interface OWLAxiomCollectionBooleanArgs
    
    Type Parameters:
    
    T - axiom type
    
    Parameters:
    
    axiomType - The type of axiom to count
    
    b - if INCLUDED, include imports closure.
    
    Returns:
    
    The number of the specified types of axioms in this collection
  - containsAxiom
```
@Deprecated
public boolean containsAxiom(@Nonnull
                                         OWLAxiom owlAxiom,
                                         boolean b)
```
    Deprecated.
    
    Description copied from interface: OWLAxiomCollectionBooleanArgs
    
    Determines if this ontology contains the specified axiom, optionally including the imports closure.
    
    Specified by:
    
    containsAxiom in interface OWLAxiomCollectionBooleanArgs
    
    Parameters:
    
    owlAxiom - The axiom to search.
    
    b - if INCLUDED, include imports closure.
    
    Returns:
    
    true if the ontology contains the specified axiom.
  - containsAxiomIgnoreAnnotations
```
@Deprecated
public boolean containsAxiomIgnoreAnnotations(@Nonnull
                                                          OWLAxiom owlAxiom,
                                                          boolean b)
```
    Deprecated.
    
    Description copied from interface: OWLAxiomCollectionBooleanArgs
    
    Determines if this ontology contains the specified axiom, optionally including the imports closure. Annotations are ignored when searching for the axiom. For example, if the collection contains SubClassOf(Annotation(p V) A B) then this method will return true if the ontology contains SubClassOf(A B) or SubClassOf(Annotation(q S) A B) for any annotation property q and any annotation value S.
    
    Specified by:
    
    containsAxiomIgnoreAnnotations in interface OWLAxiomCollectionBooleanArgs
    
    Parameters:
    
    owlAxiom - The axiom to search.
    
    b - if true, include imports closure.
    
    Returns:
    
    true if the ontology contains the specified axiom.
  - getAxiomsIgnoreAnnotations
```
@Deprecated
 @Nonnull
public Set<OWLAxiom> getAxiomsIgnoreAnnotations(@Nonnull
                                                                      OWLAxiom owlAxiom,
                                                                      boolean b)
```
    Deprecated.
    
    Description copied from interface: OWLAxiomCollectionBooleanArgs
    
    Gets the set of axioms contained in this collection that have the same "logical structure" as the specified axiom; i.e., all axioms that equal the specified axiom, when ignoring annotations. Optionally the imports closure is included.
    
    Specified by:
    
    getAxiomsIgnoreAnnotations in interface OWLAxiomCollectionBooleanArgs
    
    Parameters:
    
    owlAxiom - The axiom that the returned axioms must equal, ignoring annotations.
    
    b - if true, include imports closure.
    
    Returns:
    
    The set of axioms such that for any two axioms, axiomA and axiomB in the set, axiomA.getAxiomWithoutAnnotations() is equal to axiomB.getAxiomWithoutAnnotations(). The specified axiom will be contained in the set.
  - getReferencingAxioms
```
@Deprecated
 @Nonnull
public Set<OWLAxiom> getReferencingAxioms(@Nonnull
                                                                OWLPrimitive owlPrimitive,
                                                                boolean b)
```
    Deprecated.
    
    Description copied from interface: OWLAxiomCollectionBooleanArgs
    
    Gets the axioms where the specified OWLPrimitive appears in the signature of the axiom.
    Note that currently signatures contain OWLEntity only. This method accepts OWLPrimitive so that also anonymous individuals, literals, IRIs and annotation values can be passed in, although they are not included in the axioms' signatures.
    
    Specified by:
    
    getReferencingAxioms in interface OWLAxiomCollectionBooleanArgs
    
    Parameters:
    
    owlPrimitive - The entity that should be directly referred to by all axioms in the results set.
    
    b - if INCLUDED, include imports closure.
    
    Returns:
    
    All axioms referencing the entity. The set is a copy of the data.
  - getAxioms
```
@Nonnull
 @Deprecated
public Set<OWLClassAxiom> getAxioms(@Nonnull
                                                          OWLClass owlClass,
                                                          boolean b)
```
    Deprecated.
    
    Description copied from interface: OWLAxiomCollectionBooleanArgs
    
    Gets the axioms that form the definition/description of a class.
    Specified by:
    
    getAxioms in interface OWLAxiomCollectionBooleanArgs
    
    Parameters:
    
    owlClass - The class whose describing axioms are to be retrieved.
    
    b - if INCLUDED, include imports closure.
    
    Returns:
    A set of class axioms that describe the class. This set includes
    
    Subclass axioms where the subclass is equal to the specified class
    
    Equivalent class axioms where the specified class is an operand in the equivalent class axiom
    
    Disjoint class axioms where the specified class is an operand in the disjoint class axiom
    
    Disjoint union axioms, where the specified class is the named class that is equivalent to the disjoint union
    
    The returned set is a copy of the data.
  - getAxioms
```
@Nonnull
 @Deprecated
public Set<OWLObjectPropertyAxiom> getAxioms(@Nonnull
                                                                   OWLObjectPropertyExpression owlObjectPropertyExpression,
                                                                   boolean b)
```
    Deprecated.
    
    Description copied from interface: OWLAxiomCollectionBooleanArgs
    
    Gets the axioms that form the definition/description of an object property.
    Specified by:
    
    getAxioms in interface OWLAxiomCollectionBooleanArgs
    
    Parameters:
    
    owlObjectPropertyExpression - The property whose defining axioms are to be retrieved.
    
    b - if INCLUDED, include imports closure.
    
    Returns:
    A set of object property axioms that includes
    
    Sub-property axioms where the sub property is the specified property
    
    Equivalent property axioms where the axiom contains the specified property
    
    Equivalent property axioms that contain the inverse of the specified property
    
    Disjoint property axioms that contain the specified property
    
    Domain axioms that specify a domain of the specified property
    
    Range axioms that specify a range of the specified property
    
    Any property characteristic axiom (i.e. Functional, Symmetric, Reflexive etc.) whose subject is the specified property
    
    Inverse properties axioms that contain the specified property
    
    The set that is returned is a copy of the data.
  - getAxioms
```
@Nonnull
 @Deprecated
public Set<OWLDataPropertyAxiom> getAxioms(@Nonnull
                                                                 OWLDataProperty owlDataProperty,
                                                                 boolean b)
```
    Deprecated.
    
    Description copied from interface: OWLAxiomCollectionBooleanArgs
    
    Gets the axioms that form the definition/description of a data property.
    Specified by:
    
    getAxioms in interface OWLAxiomCollectionBooleanArgs
    
    Parameters:
    
    owlDataProperty - The property whose defining axioms are to be retrieved.
    
    b - if INCLUDED, include imports closure.
    
    Returns:
    A set of data property axioms that includes
    
    Sub-property axioms where the sub property is the specified property
    
    Equivalent property axioms where the axiom contains the specified property
    
    Disjoint property axioms that contain the specified property
    
    Domain axioms that specify a domain of the specified property
    
    Range axioms that specify a range of the specified property
    
    Any property characteristic axiom (i.e. Functional, Symmetric, Reflexive etc.) whose subject is the specified property
    
    The set is a copy of the data.
  - getAxioms
```
@Nonnull
 @Deprecated
public Set<OWLIndividualAxiom> getAxioms(@Nonnull
                                                               OWLIndividual owlIndividual,
                                                               boolean b)
```
    Deprecated.
    
    Description copied from interface: OWLAxiomCollectionBooleanArgs
    
    Gets the axioms that form the definition/description of an individual.
    Specified by:
    
    getAxioms in interface OWLAxiomCollectionBooleanArgs
    
    Parameters:
    
    owlIndividual - The individual whose defining axioms are to be retrieved.
    
    b - if INCLUDED, include imports closure.
    
    Returns:
    A set of individual axioms that includes
    
    Individual type assertions that assert the type of the specified individual
    
    Same individuals axioms that contain the specified individual
    
    Different individuals axioms that contain the specified individual
    
    Object property assertion axioms whose subject is the specified individual
    
    Data property assertion axioms whose subject is the specified individual
    
    Negative object property assertion axioms whose subject is the specified individual
    
    Negative data property assertion axioms whose subject is the specified individual
    
    The set is a copy of the data.
  - getAxioms
```
@Nonnull
 @Deprecated
public Set<OWLAnnotationAxiom> getAxioms(@Nonnull
                                                               OWLAnnotationProperty owlAnnotationProperty,
                                                               boolean b)
```
    Deprecated.
    
    Description copied from interface: OWLAxiomCollectionBooleanArgs
    
    Gets the axioms that form the definition/description of an annotation property.
    Specified by:
    
    getAxioms in interface OWLAxiomCollectionBooleanArgs
    
    Parameters:
    
    owlAnnotationProperty - The property whose definition axioms are to be retrieved
    
    b - if INCLUDED, include imports closure.
    
    Returns:
    A set of axioms that includes
    
    Annotation subpropertyOf axioms where the specified property is the sub property
    
    Annotation property domain axioms that specify a domain for the specified property
    
    Annotation property range axioms that specify a range for the specified property
    
    The set is a copy of the data.
  - getAxioms
```
@Nonnull
 @Deprecated
public Set<OWLDatatypeDefinitionAxiom> getAxioms(@Nonnull
                                                                       OWLDatatype owlDatatype,
                                                                       boolean b)
```
    Deprecated.
    
    Description copied from interface: OWLAxiomCollectionBooleanArgs
    
    Gets the datatype definition axioms for the specified datatype.
    
    Specified by:
    
    getAxioms in interface OWLAxiomCollectionBooleanArgs
    
    Parameters:
    
    owlDatatype - The datatype
    
    b - if INCLUDED, include imports closure.
    
    Returns:
    
    The set of datatype definition axioms for the specified datatype. The set is a copy of the data.
  - getAxiomCount
```
public int getAxiomCount()
```
    Specified by:
    
    getAxiomCount in interface OWLAxiomCollectionNoArgs
    
    Returns:
    
    The number of axioms in this ontology.
  - getLogicalAxiomCount
```
public int getLogicalAxiomCount()
```
    Description copied from interface: OWLAxiomCollectionNoArgs
    
    Gets the number of logical axioms in this collection.
    
    Specified by:
    
    getLogicalAxiomCount in interface OWLAxiomCollectionNoArgs
    
    Returns:
    
    The number of axioms in this collection.
  - getAxiomCount
```
public <T extends OWLAxiom> int getAxiomCount(@Nonnull
                                              AxiomType<T> axiomType)
```
    Description copied from interface: OWLAxiomCollectionNoArgs
    
    Gets the axiom count of a specific type of axiom.
    
    Specified by:
    
    getAxiomCount in interface OWLAxiomCollectionNoArgs
    
    Type Parameters:
    
    T - axiom type class
    
    Parameters:
    
    axiomType - The type of axiom to count
    
    Returns:
    
    The number of the specified types of axioms in this collection
  - containsAxiomIgnoreAnnotations
```
public boolean containsAxiomIgnoreAnnotations(@Nonnull
                                              OWLAxiom owlAxiom)
```
    Description copied from interface: OWLAxiomCollectionNoArgs
    
    Determines if this ontology contains the specified axiom.
    
    Specified by:
    
    containsAxiomIgnoreAnnotations in interface OWLAxiomCollectionNoArgs
    
    Parameters:
    
    owlAxiom - The axiom to search.
    
    Returns:
    
    true if the ontology contains the specified axiom.
  - getAxiomsIgnoreAnnotations
```
@Nonnull
public Set<OWLAxiom> getAxiomsIgnoreAnnotations(@Nonnull
                                                         OWLAxiom owlAxiom)
```
    Description copied from interface: OWLAxiomCollectionNoArgs
    
    Gets the set of axioms contained in this collection that have the same "logical structure" as the specified axiom; i.e., all axioms that equal the specified axiom, when ignoring annotations. Optionally the imports closure is included.
    
    Specified by:
    
    getAxiomsIgnoreAnnotations in interface OWLAxiomCollectionNoArgs
    
    Parameters:
    
    owlAxiom - The axiom that the returned axioms must equal, ignoring annotations.
    
    Returns:
    
    The set of axioms such that for any two axioms, axiomA and axiomB in the set, axiomA.getAxiomWithoutAnnotations() is equal to axiomB.getAxiomWithoutAnnotations(). The specified axiom will be contained in the set.
  - getReferencingAxioms
```
@Nonnull
public Set<OWLAxiom> getReferencingAxioms(@Nonnull
                                                   OWLPrimitive owlPrimitive)
```
    Description copied from interface: OWLAxiomCollectionNoArgs
    
    Gets the axioms where the specified OWLPrimitive appears in the signature of the axiom.
    Note that currently signatures contain OWLEntity only. This method accepts OWLPrimitive so that also anonymous individuals, literals, IRIs and annotation values can be passed in, although they are not included in the axioms' signatures.
    
    Specified by:
    
    getReferencingAxioms in interface OWLAxiomCollectionNoArgs
    
    Parameters:
    
    owlPrimitive - The entity that should be directly referred to by all axioms in the results set.
    
    Returns:
    
    All axioms referencing the entity. The set is a copy of the data.
  - getAxioms
```
@Nonnull
 @Deprecated
public Set<OWLClassAxiom> getAxioms(@Nonnull
                                                          OWLClass owlClass)
```
    Deprecated.
    
    Description copied from interface: OWLAxiomCollectionNoArgs
    
    Gets the axioms that form the definition/description of a class.
    Specified by:
    
    getAxioms in interface OWLAxiomCollectionNoArgs
    
    Parameters:
    
    owlClass - The class whose describing axioms are to be retrieved.
    
    Returns:
    A set of class axioms that describe the class. This set includes
    
    Subclass axioms where the subclass is equal to the specified class
    
    Equivalent class axioms where the specified class is an operand in the equivalent class axiom
    
    Disjoint class axioms where the specified class is an operand in the disjoint class axiom
    
    Disjoint union axioms, where the specified class is the named class that is equivalent to the disjoint union
    
    The returned set is a copy of the data.
  - getAxioms
```
@Nonnull
 @Deprecated
public Set<OWLObjectPropertyAxiom> getAxioms(@Nonnull
                                                                   OWLObjectPropertyExpression owlObjectPropertyExpression)
```
    Deprecated.
    
    Description copied from interface: OWLAxiomCollectionNoArgs
    
    Gets the axioms that form the definition/description of an object property.
    Specified by:
    
    getAxioms in interface OWLAxiomCollectionNoArgs
    
    Parameters:
    
    owlObjectPropertyExpression - The property whose defining axioms are to be retrieved.
    
    Returns:
    A set of object property axioms that includes
    
    Sub-property axioms where the sub property is the specified property
    
    Equivalent property axioms where the axiom contains the specified property
    
    Equivalent property axioms that contain the inverse of the specified property
    
    Disjoint property axioms that contain the specified property
    
    Domain axioms that specify a domain of the specified property
    
    Range axioms that specify a range of the specified property
    
    Any property characteristic axiom (i.e. Functional, Symmetric, Reflexive etc.) whose subject is the specified property
    
    Inverse properties axioms that contain the specified property
    
    The set that is returned is a copy of the data.
  - getAxioms
```
@Nonnull
 @Deprecated
public Set<OWLDataPropertyAxiom> getAxioms(@Nonnull
                                                                 OWLDataProperty owlDataProperty)
```
    Deprecated.
    
    Description copied from interface: OWLAxiomCollectionNoArgs
    
    Gets the axioms that form the definition/description of a data property.
    Specified by:
    
    getAxioms in interface OWLAxiomCollectionNoArgs
    
    Parameters:
    
    owlDataProperty - The property whose defining axioms are to be retrieved.
    
    Returns:
    A set of data property axioms that includes
    
    Sub-property axioms where the sub property is the specified property
    
    Equivalent property axioms where the axiom contains the specified property
    
    Disjoint property axioms that contain the specified property
    
    Domain axioms that specify a domain of the specified property
    
    Range axioms that specify a range of the specified property
    
    Any property characteristic axiom (i.e. Functional, Symmetric, Reflexive etc.) whose subject is the specified property
    
    The set is a copy of the data.
  - getAxioms
```
@Nonnull
 @Deprecated
public Set<OWLIndividualAxiom> getAxioms(@Nonnull
                                                               OWLIndividual owlIndividual)
```
    Deprecated.
    
    Description copied from interface: OWLAxiomCollectionNoArgs
    
    Gets the axioms that form the definition/description of an individual.
    Specified by:
    
    getAxioms in interface OWLAxiomCollectionNoArgs
    
    Parameters:
    
    owlIndividual - The individual whose defining axioms are to be retrieved.
    
    Returns:
    A set of individual axioms that includes
    
    Individual type assertions that assert the type of the specified individual
    
    Same individuals axioms that contain the specified individual
    
    Different individuals axioms that contain the specified individual
    
    Object property assertion axioms whose subject is the specified individual
    
    Data property assertion axioms whose subject is the specified individual
    
    Negative object property assertion axioms whose subject is the specified individual
    
    Negative data property assertion axioms whose subject is the specified individual
    
    The set is a copy of the data.
  - getAxioms
```
@Nonnull
 @Deprecated
public Set<OWLAnnotationAxiom> getAxioms(@Nonnull
                                                               OWLAnnotationProperty owlAnnotationProperty)
```
    Deprecated.
    
    Description copied from interface: OWLAxiomCollectionNoArgs
    
    Gets the axioms that form the definition/description of an annotation property.
    Specified by:
    
    getAxioms in interface OWLAxiomCollectionNoArgs
    
    Parameters:
    
    owlAnnotationProperty - The property whose definition axioms are to be retrieved
    
    Returns:
    A set of axioms that includes
    
    Annotation subpropertyOf axioms where the specified property is the sub property
    
    Annotation property domain axioms that specify a domain for the specified property
    
    Annotation property range axioms that specify a range for the specified property
    
    The set is a copy of the data.
  - getAxioms
```
@Nonnull
 @Deprecated
public Set<OWLDatatypeDefinitionAxiom> getAxioms(@Nonnull
                                                                       OWLDatatype owlDatatype)
```
    Deprecated.
    
    Description copied from interface: OWLAxiomCollectionNoArgs
    
    Gets the datatype definition axioms for the specified datatype.
    
    Specified by:
    
    getAxioms in interface OWLAxiomCollectionNoArgs
    
    Parameters:
    
    owlDatatype - The datatype
    
    Returns:
    
    The set of datatype definition axioms for the specified datatype. The set is a copy of the data.
  - getClassesInSignature
```
@Nonnull
public Set<OWLClass> getClassesInSignature(@Nonnull
                                                    Imports imports)
```
    Description copied from interface: OWLSignature
    
    Gets the classes in the signature and optionally the imports closure.
    
    Specified by:
    
    getClassesInSignature in interface OWLSignature
    
    Parameters:
    
    imports - if INCLUDED, include imports closure.
    
    Returns:
    
    the set of classes in the signature, optionally including the import closure. The set that is returned is a copy of the data.
  - getObjectPropertiesInSignature
```
@Nonnull
public Set<OWLObjectProperty> getObjectPropertiesInSignature(@Nonnull
                                                                      Imports imports)
```
    Description copied from interface: OWLSignature
    
    Gets the object properties in the signature and optionally the imports closure.
    
    Specified by:
    
    getObjectPropertiesInSignature in interface OWLSignature
    
    Parameters:
    
    imports - if INCLUDED, include imports closure.
    
    Returns:
    
    the set of object properties in the signature, optionally including the import closure. The set that is returned is a copy of the data.
  - getDataPropertiesInSignature
```
@Nonnull
public Set<OWLDataProperty> getDataPropertiesInSignature(@Nonnull
                                                                  Imports imports)
```
    Description copied from interface: OWLSignature
    
    Gets the data properties in the signature and optionally the imports closure.
    
    Specified by:
    
    getDataPropertiesInSignature in interface OWLSignature
    
    Parameters:
    
    imports - if INCLUDED, include imports closure.
    
    Returns:
    
    the set of data properties in the signature, optionally including the import closure. The set that is returned is a copy of the data.
  - getIndividualsInSignature
```
@Nonnull
public Set<OWLNamedIndividual> getIndividualsInSignature(@Nonnull
                                                                  Imports imports)
```
    Description copied from interface: OWLSignature
    
    Gets the named individuals in the signature and optionally the imports closure.
    
    Specified by:
    
    getIndividualsInSignature in interface OWLSignature
    
    Parameters:
    
    imports - if INCLUDED, include imports closure.
    
    Returns:
    
    the set of individuals in the signature, optionally including the import closure. The set that is returned is a copy of the data.
  - getReferencedAnonymousIndividuals
```
@Nonnull
public Set<OWLAnonymousIndividual> getReferencedAnonymousIndividuals(@Nonnull
                                                                              Imports imports)
```
    Description copied from interface: OWLSignature
    
    Gets the referenced anonymous individuals in the signature and optionally the imports closure.
    
    Specified by:
    
    getReferencedAnonymousIndividuals in interface OWLSignature
    
    Parameters:
    
    imports - if INCLUDED, include imports closure.
    
    Returns:
    
    The set of referenced anonymous individuals
  - getDatatypesInSignature
```
@Nonnull
public Set<OWLDatatype> getDatatypesInSignature(@Nonnull
                                                         Imports imports)
```
    Description copied from interface: OWLSignature
    
    Gets the datatypes in the signature and optionally the imports closure.
    
    Specified by:
    
    getDatatypesInSignature in interface OWLSignature
    
    Parameters:
    
    imports - if INCLUDED, include imports closure.
    
    Returns:
    
    the set of datatypes in the signature of this ontology, optionally including the import closure. The set that is returned is a copy of the data.
  - getAnnotationPropertiesInSignature
```
@Nonnull
public Set<OWLAnnotationProperty> getAnnotationPropertiesInSignature(@Nonnull
                                                                              Imports imports)
```
    Description copied from interface: OWLSignature
    
    Gets the annotation properties in the signature and optionally the imports closure.
    
    Specified by:
    
    getAnnotationPropertiesInSignature in interface OWLSignature
    
    Parameters:
    
    imports - if INCLUDED, include imports closure.
    
    Returns:
    
    the set of annotation properties in the signature, optionally including the import closure. The set that is returned is a copy of the data.
  - containsEntityInSignature
```
public boolean containsEntityInSignature(@Nonnull
                                         OWLEntity owlEntity,
                                         @Nonnull
                                         Imports imports)
```
    Description copied from interface: OWLSignature
    
    Determines if the signature contains the specified entity.
    
    Specified by:
    
    containsEntityInSignature in interface OWLSignature
    
    Parameters:
    
    owlEntity - The entity
    
    imports - if INCLUDED, include imports closure.
    
    Returns:
    
    true if the signature or the import closure contains a reference to the specified entity.
  - containsEntityInSignature
```
public boolean containsEntityInSignature(@Nonnull
                                         IRI iri,
                                         @Nonnull
                                         Imports imports)
```
    Description copied from interface: OWLSignature
    
    Determines if the signature contains an entity with the specified IRI.
    
    Specified by:
    
    containsEntityInSignature in interface OWLSignature
    
    Parameters:
    
    iri - The IRI to test for.
    
    imports - if INCLUDED, include imports closure.
    
    Returns:
    
    true if the signature or the import closure contains an entity with the specified IRI.
  - containsClassInSignature
```
public boolean containsClassInSignature(@Nonnull
                                        IRI iri,
                                        @Nonnull
                                        Imports imports)
```
    Description copied from interface: OWLSignature
    
    Determines if the signature contains an OWLClass that has the specified IRI.
    
    Specified by:
    
    containsClassInSignature in interface OWLSignature
    
    Parameters:
    
    iri - The IRI of the class to check for
    
    imports - if INCLUDED, include imports closure.
    
    Returns:
    
    true if the signature or the import closure contains an entity with the specified IRI.
  - containsObjectPropertyInSignature
```
public boolean containsObjectPropertyInSignature(@Nonnull
                                                 IRI iri,
                                                 @Nonnull
                                                 Imports imports)
```
    Description copied from interface: OWLSignature
    
    Determines if the signature contains an OWLObjectProperty that has the specified IRI.
    
    Specified by:
    
    containsObjectPropertyInSignature in interface OWLSignature
    
    Parameters:
    
    iri - The IRI of the OWLObjectProperty to check for
    
    imports - if INCLUDED, include imports closure.
    
    Returns:
    
    true if the signature or the import closure contains an object property with the specified IRI.
  - containsDataPropertyInSignature
```
public boolean containsDataPropertyInSignature(@Nonnull
                                               IRI iri,
                                               @Nonnull
                                               Imports imports)
```
    Description copied from interface: OWLSignature
    
    Determines if the signature contains an OWLDataProperty that has the specified IRI.
    
    Specified by:
    
    containsDataPropertyInSignature in interface OWLSignature
    
    Parameters:
    
    iri - The IRI of the OWLDataProperty to check for
    
    imports - if INCLUDED, include imports closure.
    
    Returns:
    
    true if the signature or the import closure contains a data property with the specified IRI.
  - containsAnnotationPropertyInSignature
```
public boolean containsAnnotationPropertyInSignature(@Nonnull
                                                     IRI iri,
                                                     @Nonnull
                                                     Imports imports)
```
    Description copied from interface: OWLSignature
    
    Determines if the signature contains an OWLAnnotationProperty that has the specified IRI.
    
    Specified by:
    
    containsAnnotationPropertyInSignature in interface OWLSignature
    
    Parameters:
    
    iri - The IRI of the OWLAnnotationProperty to check for
    
    imports - if INCLUDED, include imports closure.
    
    Returns:
    
    true if the signature or the import closure contains an annotation property with the specified IRI.
  - containsDatatypeInSignature
```
public boolean containsDatatypeInSignature(@Nonnull
                                           IRI iri,
                                           @Nonnull
                                           Imports imports)
```
    Description copied from interface: OWLSignature
    
    Determines if the signature contains an OWLDatatype that has the specified IRI.
    
    Specified by:
    
    containsDatatypeInSignature in interface OWLSignature
    
    Parameters:
    
    iri - The IRI of the OWLDatatype to check for
    
    imports - if INCLUDED, include imports closure.
    
    Returns:
    
    true if the signature or the import closure contains a datatype with the specified IRI.
  - containsIndividualInSignature
```
public boolean containsIndividualInSignature(@Nonnull
                                             IRI iri,
                                             @Nonnull
                                             Imports imports)
```
    Description copied from interface: OWLSignature
    
    Determines if the signature contains an OWLNamedIndividual that has the specified IRI.
    
    Specified by:
    
    containsIndividualInSignature in interface OWLSignature
    
    Parameters:
    
    iri - The IRI of the OWLNamedIndividual to check for
    
    imports - if INCLUDED, include imports closure.
    
    Returns:
    
    true if the signature or the import closure contains an individual with the specified IRI.
  - containsDatatypeInSignature
```
public boolean containsDatatypeInSignature(@Nonnull
                                           IRI iri)
```
    Description copied from interface: OWLSignature
    
    Determines if the signature contains an OWLDatatype that has the specified IRI.
    
    Specified by:
    
    containsDatatypeInSignature in interface OWLSignature
    
    Parameters:
    
    iri - The IRI of the OWLDatatype to check for
    
    Returns:
    
    true if the signature or the import closure contains a datatype with the specified IRI.
  - containsEntityInSignature
```
public boolean containsEntityInSignature(@Nonnull
                                         IRI iri)
```
    Description copied from interface: OWLSignature
    
    Determines if the signature contains an entity with the specified IRI.
    
    Specified by:
    
    containsEntityInSignature in interface OWLSignature
    
    Parameters:
    
    iri - The IRI to test for.
    
    Returns:
    
    true if the signature or the import closure contains an entity with the specified IRI.
  - containsClassInSignature
```
public boolean containsClassInSignature(@Nonnull
                                        IRI iri)
```
    Description copied from interface: OWLSignature
    
    Determines if the signature contains an OWLClass that has the specified IRI.
    
    Specified by:
    
    containsClassInSignature in interface OWLSignature
    
    Parameters:
    
    iri - The IRI of the class to check for
    
    Returns:
    
    true if the signature or the import closure contains an entity with the specified IRI.
  - containsObjectPropertyInSignature
```
public boolean containsObjectPropertyInSignature(@Nonnull
                                                 IRI iri)
```
    Description copied from interface: OWLSignature
    
    Determines if the signature contains an OWLObjectProperty that has the specified IRI.
    
    Specified by:
    
    containsObjectPropertyInSignature in interface OWLSignature
    
    Parameters:
    
    iri - The IRI of the OWLObjectProperty to check for
    
    Returns:
    
    true if the signature or the import closure contains an object property with the specified IRI.
  - containsDataPropertyInSignature
```
public boolean containsDataPropertyInSignature(@Nonnull
                                               IRI iri)
```
    Description copied from interface: OWLSignature
    
    Determines if the signature contains an OWLDataProperty that has the specified IRI.
    
    Specified by:
    
    containsDataPropertyInSignature in interface OWLSignature
    
    Parameters:
    
    iri - The IRI of the OWLDataProperty to check for
    
    Returns:
    
    true if the signature or the import closure contains a data property with the specified IRI.
  - containsAnnotationPropertyInSignature
```
public boolean containsAnnotationPropertyInSignature(@Nonnull
                                                     IRI iri)
```
    Description copied from interface: OWLSignature
    
    Determines if the signature contains an OWLAnnotationProperty that has the specified IRI.
    
    Specified by:
    
    containsAnnotationPropertyInSignature in interface OWLSignature
    
    Parameters:
    
    iri - The IRI of the OWLAnnotationProperty to check for
    
    Returns:
    
    true if the signature or the import closure contains an annotation property with the specified IRI.
  - containsIndividualInSignature
```
public boolean containsIndividualInSignature(@Nonnull
                                             IRI iri)
```
    Description copied from interface: OWLSignature
    
    Determines if the signature contains an OWLNamedIndividual that has the specified IRI.
    
    Specified by:
    
    containsIndividualInSignature in interface OWLSignature
    
    Parameters:
    
    iri - The IRI of the OWLNamedIndividual to check for
    
    Returns:
    
    true if the signature or the import closure contains an individual with the specified IRI.
  - getEntitiesInSignature
```
@Nonnull
public Set<OWLEntity> getEntitiesInSignature(@Nonnull
                                                      IRI iri,
                                                      @Nonnull
                                                      Imports imports)
```
    Description copied from interface: OWLSignature
    
    Gets the entities in the signature that have the specified IRI.
    
    Specified by:
    
    getEntitiesInSignature in interface OWLSignature
    
    Parameters:
    
    iri - The IRI of the entitied to be retrieved.
    
    imports - if INCLUDED, include imports closure.
    
    Returns:
    
    the set of entities with the specified IRI, optionally including the ones in the import closure.
  - getPunnedIRIs
```
public Set<IRI> getPunnedIRIs(@Nonnull
                              Imports imports)
```
    Description copied from interface: OWLSignature
    
    Calculates the set of IRIs that are used for more than one entity type.
    
    Specified by:
    
    getPunnedIRIs in interface OWLSignature
    
    Parameters:
    
    imports - if INCLUDED, include imports closure.
    
    Returns:
    
    punned IRIs.
  - containsReference
```
public boolean containsReference(@Nonnull
                                 OWLEntity owlEntity,
                                 @Nonnull
                                 Imports imports)
```
    Specified by:
    
    containsReference in interface OWLSignature
    
    Parameters:
    
    owlEntity - entyty to check
    
    imports - if INCLUDED, include imports closure.
    
    Returns:
    
    true if entity is referenced
  - containsReference
```
public boolean containsReference(@Nonnull
                                 OWLEntity owlEntity)
```
    Specified by:
    
    containsReference in interface OWLSignature
    
    Parameters:
    
    owlEntity - entyty to check
    
    Returns:
    
    true if entity is referenced
  - getEntitiesInSignature
```
@Nonnull
public Set<OWLEntity> getEntitiesInSignature(@Nonnull
                                                      IRI iri)
```
    Specified by:
    
    getEntitiesInSignature in interface HasGetEntitiesInSignature
    
    Parameters:
    
    iri - IRI for all entities to retrieve
    
    Returns:
    
    entities with IRI equal to entityIRI
  - getClassesInSignature
```
@Deprecated
 @Nonnull
public Set<OWLClass> getClassesInSignature(boolean b)
```
    Deprecated.
    
    Description copied from interface: OWLSignatureBooleanArgs
    
    Gets the classes in the signature and optionally the imports closure.
    
    Specified by:
    
    getClassesInSignature in interface OWLSignatureBooleanArgs
    
    Parameters:
    
    b - if true, include imports closure.
    
    Returns:
    
    the set of classes in the signature, optionally including the import closure. The set that is returned is a copy of the data.
  - getObjectPropertiesInSignature
```
@Deprecated
 @Nonnull
public Set<OWLObjectProperty> getObjectPropertiesInSignature(boolean b)
```
    Deprecated.
    
    Description copied from interface: OWLSignatureBooleanArgs
    
    Gets the object properties in the signature and optionally the imports closure.
    
    Specified by:
    
    getObjectPropertiesInSignature in interface OWLSignatureBooleanArgs
    
    Parameters:
    
    b - if true, include imports closure.
    
    Returns:
    
    the set of object properties in the signature, optionally including the import closure. The set that is returned is a copy of the data.
  - getDataPropertiesInSignature
```
@Deprecated
 @Nonnull
public Set<OWLDataProperty> getDataPropertiesInSignature(boolean b)
```
    Deprecated.
    
    Description copied from interface: OWLSignatureBooleanArgs
    
    Gets the data properties in the signature and optionally the imports closure.
    
    Specified by:
    
    getDataPropertiesInSignature in interface OWLSignatureBooleanArgs
    
    Parameters:
    
    b - if true, include imports closure.
    
    Returns:
    
    the set of data properties in the signature, optionally including the import closure. The set that is returned is a copy of the data.
  - getIndividualsInSignature
```
@Deprecated
 @Nonnull
public Set<OWLNamedIndividual> getIndividualsInSignature(boolean b)
```
    Deprecated.
    
    Description copied from interface: OWLSignatureBooleanArgs
    
    Gets the named individuals in the signature and optionally the imports closure.
    
    Specified by:
    
    getIndividualsInSignature in interface OWLSignatureBooleanArgs
    
    Parameters:
    
    b - if true, include imports closure.
    
    Returns:
    
    the set of individuals in the signature, optionally including the import closure. The set that is returned is a copy of the data.
  - getReferencedAnonymousIndividuals
```
@Deprecated
 @Nonnull
public Set<OWLAnonymousIndividual> getReferencedAnonymousIndividuals(boolean b)
```
    Deprecated.
    
    Description copied from interface: OWLSignatureBooleanArgs
    
    Gets the referenced anonymous individuals in the signature and optionally the imports closure.
    
    Specified by:
    
    getReferencedAnonymousIndividuals in interface OWLSignatureBooleanArgs
    
    Parameters:
    
    b - if true, include imports closure.
    
    Returns:
    
    The set of referenced anonymous individuals
  - getDatatypesInSignature
```
@Deprecated
 @Nonnull
public Set<OWLDatatype> getDatatypesInSignature(boolean b)
```
    Deprecated.
    
    Description copied from interface: OWLSignatureBooleanArgs
    
    Gets the datatypes in the signature and optionally the imports closure.
    
    Specified by:
    
    getDatatypesInSignature in interface OWLSignatureBooleanArgs
    
    Parameters:
    
    b - if true, include imports closure.
    
    Returns:
    
    the set of datatypes in the signature of this ontology, optionally including the import closure. The set that is returned is a copy of the data.
  - getAnnotationPropertiesInSignature
```
@Deprecated
 @Nonnull
public Set<OWLAnnotationProperty> getAnnotationPropertiesInSignature(boolean b)
```
    Deprecated.
    
    Description copied from interface: OWLSignatureBooleanArgs
    
    Gets the annotation properties in the signature and optionally the imports closure.
    
    Specified by:
    
    getAnnotationPropertiesInSignature in interface OWLSignatureBooleanArgs
    
    Parameters:
    
    b - if true, include imports closure.
    
    Returns:
    
    the set of annotation properties in the signature, optionally including the import closure. The set that is returned is a copy of the data.
  - containsEntityInSignature
```
@Deprecated
public boolean containsEntityInSignature(@Nonnull
                                                     OWLEntity owlEntity,
                                                     boolean b)
```
    Deprecated.
    
    Description copied from interface: OWLSignatureBooleanArgs
    
    Determines if the signature contains the specified entity.
    
    Specified by:
    
    containsEntityInSignature in interface OWLSignatureBooleanArgs
    
    Parameters:
    
    owlEntity - The entity
    
    b - if true, include imports closure.
    
    Returns:
    
    true if the signature or the import closure contains a reference to the specified entity.
  - containsEntityInSignature
```
@Deprecated
public boolean containsEntityInSignature(@Nonnull
                                                     IRI iri,
                                                     boolean b)
```
    Deprecated.
    
    Description copied from interface: OWLSignatureBooleanArgs
    
    Determines if the signature contains an entity with the specified IRI.
    
    Specified by:
    
    containsEntityInSignature in interface OWLSignatureBooleanArgs
    
    Parameters:
    
    iri - The IRI to test for.
    
    b - if true, include imports closure.
    
    Returns:
    
    true if the signature or the import closure contains an entity with the specified IRI.
  - containsClassInSignature
```
@Deprecated
public boolean containsClassInSignature(@Nonnull
                                                    IRI iri,
                                                    boolean b)
```
    Deprecated.
    
    Description copied from interface: OWLSignatureBooleanArgs
    
    Determines if the signature contains an OWLClass that has the specified IRI.
    
    Specified by:
    
    containsClassInSignature in interface OWLSignatureBooleanArgs
    
    Parameters:
    
    iri - The IRI of the class to check for
    
    b - if true, include imports closure.
    
    Returns:
    
    true if the signature or the import closure contains an entity with the specified IRI.
  - containsObjectPropertyInSignature
```
@Deprecated
public boolean containsObjectPropertyInSignature(@Nonnull
                                                             IRI iri,
                                                             boolean b)
```
    Deprecated.
    
    Description copied from interface: OWLSignatureBooleanArgs
    
    Determines if the signature contains an OWLObjectProperty that has the specified IRI.
    
    Specified by:
    
    containsObjectPropertyInSignature in interface OWLSignatureBooleanArgs
    
    Parameters:
    
    iri - The IRI of the OWLObjectProperty to check for
    
    b - if true, include imports closure.
    
    Returns:
    
    true if the signature or the import closure contains an object property with the specified IRI.
  - containsDataPropertyInSignature
```
@Deprecated
public boolean containsDataPropertyInSignature(@Nonnull
                                                           IRI iri,
                                                           boolean b)
```
    Deprecated.
    
    Description copied from interface: OWLSignatureBooleanArgs
    
    Determines if the signature contains an OWLDataProperty that has the specified IRI.
    
    Specified by:
    
    containsDataPropertyInSignature in interface OWLSignatureBooleanArgs
    
    Parameters:
    
    iri - The IRI of the OWLDataProperty to check for
    
    b - if true, include imports closure.
    
    Returns:
    
    true if the signature or the import closure contains a data property with the specified IRI.
  - containsAnnotationPropertyInSignature
```
@Deprecated
public boolean containsAnnotationPropertyInSignature(@Nonnull
                                                                 IRI iri,
                                                                 boolean b)
```
    Deprecated.
    
    Description copied from interface: OWLSignatureBooleanArgs
    
    Determines if the signature contains an OWLAnnotationProperty that has the specified IRI.
    
    Specified by:
    
    containsAnnotationPropertyInSignature in interface OWLSignatureBooleanArgs
    
    Parameters:
    
    iri - The IRI of the OWLAnnotationProperty to check for
    
    b - if true, include imports closure.
    
    Returns:
    
    true if the signature or the import closure contains an annotation property with the specified IRI.
  - containsDatatypeInSignature
```
@Deprecated
public boolean containsDatatypeInSignature(@Nonnull
                                                       IRI iri,
                                                       boolean b)
```
    Deprecated.
    
    Description copied from interface: OWLSignatureBooleanArgs
    
    Determines if the signature contains an OWLDatatype that has the specified IRI.
    
    Specified by:
    
    containsDatatypeInSignature in interface OWLSignatureBooleanArgs
    
    Parameters:
    
    iri - The IRI of the OWLDatatype to check for
    
    b - if true, include imports closure.
    
    Returns:
    
    true if the signature or the import closure contains a datatype with the specified IRI.
  - containsIndividualInSignature
```
@Deprecated
public boolean containsIndividualInSignature(@Nonnull
                                                         IRI iri,
                                                         boolean b)
```
    Deprecated.
    
    Description copied from interface: OWLSignatureBooleanArgs
    
    Determines if the signature contains an OWLNamedIndividual that has the specified IRI.
    
    Specified by:
    
    containsIndividualInSignature in interface OWLSignatureBooleanArgs
    
    Parameters:
    
    iri - The IRI of the OWLNamedIndividual to check for
    
    b - if true, include imports closure.
    
    Returns:
    
    true if the signature or the import closure contains an individual with the specified IRI.
  - getEntitiesInSignature
```
@Deprecated
 @Nonnull
public Set<OWLEntity> getEntitiesInSignature(@Nonnull
                                                                   IRI iri,
                                                                   boolean b)
```
    Deprecated.
    
    Description copied from interface: OWLSignatureBooleanArgs
    
    Gets the entities in the signature that have the specified IRI.
    
    Specified by:
    
    getEntitiesInSignature in interface OWLSignatureBooleanArgs
    
    Parameters:
    
    iri - The IRI of the entitied to be retrieved.
    
    b - if true, include imports closure.
    
    Returns:
    
    the set of entities with the specified IRI, optionally including the ones in the import closure.
  - containsReference
```
@Deprecated
public boolean containsReference(@Nonnull
                                             OWLEntity owlEntity,
                                             boolean b)
```
    Deprecated.
    
    Specified by:
    
    containsReference in interface OWLSignatureBooleanArgs
    
    Parameters:
    
    owlEntity - entyty to check
    
    b - if true, include imports closure.
    
    Returns:
    
    true if entity is referenced
  - getAxioms
```
@Nonnull
public <T extends OWLAxiom> Set<T> getAxioms(@Nonnull
                                                      Class<T> aClass,
                                                      @Nonnull
                                                      OWLObject owlObject,
                                                      @Nonnull
                                                      Imports imports,
                                                      @Nonnull
                                                      Navigation navigation)
```
    Description copied from interface: OWLAxiomIndex
    
    Generic search method: returns all axioms which refer entity, are instances of type, optionally including the imports closure in the results.
    
    Specified by:
    
    getAxioms in interface OWLAxiomIndex
    
    Type Parameters:
    
    T - type of returned axioms
    
    Parameters:
    
    aClass - type of axioms
    
    owlObject - referred entity (OWLPrimitive or property/class expression)
    
    imports - if INCLUDED, include imports closure.
    
    navigation - for sub axioms (subclass, subproperty), the value specifies whether entity should appear as sub or super entity in the axioms returned. For axiom types that have no sub/super entites, this parameter is ignored.
    
    Returns:
    
    set of axioms satisfying the conditions. The set is a copy of the data.
  - filterAxioms
```
@Nonnull
public <T extends OWLAxiom> Collection<T> filterAxioms(@Nonnull
                                                                OWLAxiomSearchFilter owlAxiomSearchFilter,
                                                                @Nonnull
                                                                Object o,
                                                                @Nonnull
                                                                Imports imports)
```
    Description copied from interface: OWLAxiomIndex
    
    Generic filter type for further refining search by axiom type. The returned axioms are both belonging to one of the types listed by the filter and satisfying its pass condition.
    
    Specified by:
    
    filterAxioms in interface OWLAxiomIndex
    
    Type Parameters:
    
    T - type of returned axioms
    
    Parameters:
    
    owlAxiomSearchFilter - the filter to match
    
    o - the key. Its type is generic and it is used only by the filter.
    
    imports - if INCLUDED, include imports closure.
    
    Returns:
    
    a collection of axioms matching the request. The axioms are collected from a set, therefore the collection contains no duplicates. It is a copy of the data.
  - contains
```
public boolean contains(@Nonnull
                        OWLAxiomSearchFilter owlAxiomSearchFilter,
                        @Nonnull
                        Object o,
                        @Nonnull
                        Imports imports)
```
    Description copied from interface: OWLAxiomIndex
    
    Generic containment check type for further refining search by axiom type. The method returns true if there is at least one result matching the filter.
    
    Specified by:
    
    contains in interface OWLAxiomIndex
    
    Parameters:
    
    owlAxiomSearchFilter - the filter to match
    
    o - the key. Its type is generic and it is used only by the filter.
    
    imports - if INCLUDED, include imports closure.
    
    Returns:
    
    true if there is at least one result matching the filter.
  - getAxioms
```
@Nonnull
public <T extends OWLAxiom> Set<T> getAxioms(@Nonnull
                                                      Class<T> aClass,
                                                      @Nonnull
                                                      Class<? extends OWLObject> aClass1,
                                                      @Nonnull
                                                      OWLObject owlObject,
                                                      @Nonnull
                                                      Imports imports,
                                                      @Nonnull
                                                      Navigation navigation)
```
    Description copied from interface: OWLAxiomIndex
    
    Generic search method: resutns all axioms which refer entity, are instances of type, optionally including the imports closure in the results.
    
    Specified by:
    
    getAxioms in interface OWLAxiomIndex
    
    Type Parameters:
    
    T - type of returned axioms
    
    Parameters:
    
    aClass - type of axioms
    
    aClass1 - for overlapping indexes in the ontology internals, an explicit class rathet than the entity class might be necessary
    
    owlObject - referred entity (OWLPrimitive or property/class expression)
    
    imports - if INCLUDED, include imports closure.
    
    navigation - for sub axioms (subclass, subproperty), the value specifies whether entity should appear as sub or super entity in the axioms returned. For axiom types that have no sub/super entites, this parameter is ignored.
    
    Returns:
    
    set of axioms satisfying the conditions. The set is a copy of the data.
  - getSubAnnotationPropertyOfAxioms
```
@Nonnull
public Set<OWLSubAnnotationPropertyOfAxiom> getSubAnnotationPropertyOfAxioms(@Nonnull
                                                                                      OWLAnnotationProperty owlAnnotationProperty)
```
    Description copied from interface: OWLAxiomIndex
    
    Gets the SubAnnotationPropertyOfAxioms where the specified property is the sub-property.
    
    Specified by:
    
    getSubAnnotationPropertyOfAxioms in interface OWLAxiomIndex
    
    Parameters:
    
    owlAnnotationProperty - The sub-property of the axioms to be retrieved.
    
    Returns:
    
    the axioms matching the search. The set is a copy of the data.
  - getAnnotationPropertyDomainAxioms
```
@Nonnull
public Set<OWLAnnotationPropertyDomainAxiom> getAnnotationPropertyDomainAxioms(@Nonnull
                                                                                        OWLAnnotationProperty owlAnnotationProperty)
```
    Description copied from interface: OWLAxiomIndex
    
    Gets the OWLAnnotationPropertyDomainAxioms where the specified property is the property in the domain axiom.
    
    Specified by:
    
    getAnnotationPropertyDomainAxioms in interface OWLAxiomIndex
    
    Parameters:
    
    owlAnnotationProperty - The property that the axiom specifies a domain for.
    
    Returns:
    
    the axioms matching the search. The set is a copy of the data.
  - getAnnotationPropertyRangeAxioms
```
@Nonnull
public Set<OWLAnnotationPropertyRangeAxiom> getAnnotationPropertyRangeAxioms(@Nonnull
                                                                                      OWLAnnotationProperty owlAnnotationProperty)
```
    Description copied from interface: OWLAxiomIndex
    
    Gets the OWLAnnotationPropertyRangeAxioms where the specified property is the property in the range axiom.
    
    Specified by:
    
    getAnnotationPropertyRangeAxioms in interface OWLAxiomIndex
    
    Parameters:
    
    owlAnnotationProperty - The property that the axiom specifies a range for.
    
    Returns:
    
    the axioms matching the search. The set is a copy of the data.
  - getDeclarationAxioms
```
@Nonnull
public Set<OWLDeclarationAxiom> getDeclarationAxioms(@Nonnull
                                                              OWLEntity owlEntity)
```
    Description copied from interface: OWLAxiomIndex
    
    Gets the declaration axioms for specified entity.
    
    Specified by:
    
    getDeclarationAxioms in interface OWLAxiomIndex
    
    Parameters:
    
    owlEntity - The entity that is the subject of the set of returned axioms.
    
    Returns:
    
    the axioms matching the search. The set is a copy of the data.
  - getAnnotationAssertionAxioms
```
@Nonnull
public Set<OWLAnnotationAssertionAxiom> getAnnotationAssertionAxioms(@Nonnull
                                                                              OWLAnnotationSubject owlAnnotationSubject)
```
    Description copied from interface: OWLAxiomIndex
    
    Gets the axioms that annotate the specified entity.
    
    Specified by:
    
    getAnnotationAssertionAxioms in interface OWLAxiomIndex
    
    Parameters:
    
    owlAnnotationSubject - The entity whose annotations are to be retrieved.
    
    Returns:
    
    the axioms matching the search. The set is a copy of the data.
  - getSubClassAxiomsForSubClass
```
@Nonnull
public Set<OWLSubClassOfAxiom> getSubClassAxiomsForSubClass(@Nonnull
                                                                     OWLClass owlClass)
```
    Description copied from interface: OWLAxiomIndex
    
    Gets all of the subclass axioms where the left hand side (the subclass) is equal to the specified class.
    
    Specified by:
    
    getSubClassAxiomsForSubClass in interface OWLAxiomIndex
    
    Parameters:
    
    owlClass - The class that is equal to the left hand side of the axiom (subclass).
    
    Returns:
    
    the axioms matching the search. The set is a copy of the data.
  - getSubClassAxiomsForSuperClass
```
@Nonnull
public Set<OWLSubClassOfAxiom> getSubClassAxiomsForSuperClass(@Nonnull
                                                                       OWLClass owlClass)
```
    Description copied from interface: OWLAxiomIndex
    
    Gets all of the subclass axioms where the right hand side (the superclass) is equal to the specified class.
    
    Specified by:
    
    getSubClassAxiomsForSuperClass in interface OWLAxiomIndex
    
    Parameters:
    
    owlClass - The class
    
    Returns:
    
    the axioms matching the search. The set is a copy of the data.
  - getEquivalentClassesAxioms
```
@Nonnull
public Set<OWLEquivalentClassesAxiom> getEquivalentClassesAxioms(@Nonnull
                                                                          OWLClass owlClass)
```
    Description copied from interface: OWLAxiomIndex
    
    Gets all of the equivalent axioms in this ontology that contain the specified class as an operand.
    
    Specified by:
    
    getEquivalentClassesAxioms in interface OWLAxiomIndex
    
    Parameters:
    
    owlClass - The class to search
    
    Returns:
    
    the axioms matching the search. The set is a copy of the data.
  - getDisjointClassesAxioms
```
@Nonnull
public Set<OWLDisjointClassesAxiom> getDisjointClassesAxioms(@Nonnull
                                                                      OWLClass owlClass)
```
    Description copied from interface: OWLAxiomIndex
    
    Gets the set of disjoint class axioms that contain the specified class as an operand.
    
    Specified by:
    
    getDisjointClassesAxioms in interface OWLAxiomIndex
    
    Parameters:
    
    owlClass - The class to search
    
    Returns:
    
    the axioms matching the search. The set is a copy of the data.
  - getDisjointUnionAxioms
```
@Nonnull
public Set<OWLDisjointUnionAxiom> getDisjointUnionAxioms(@Nonnull
                                                                  OWLClass owlClass)
```
    Description copied from interface: OWLAxiomIndex
    
    Gets the set of disjoint union axioms that have the specified class as the named class that is equivalent to the disjoint union of operands. For example, if the ontology contained the axiom DisjointUnion(A, propP some C, D, E) this axiom would be returned for class A (but not for D or E).
    
    Specified by:
    
    getDisjointUnionAxioms in interface OWLAxiomIndex
    
    Parameters:
    
    owlClass - The class that indexes the axioms to be retrieved.
    
    Returns:
    
    the axioms matching the search. The set is a copy of the data.
  - getHasKeyAxioms
```
@Nonnull
public Set<OWLHasKeyAxiom> getHasKeyAxioms(@Nonnull
                                                    OWLClass owlClass)
```
    Description copied from interface: OWLAxiomIndex
    
    Gets the has key axioms that have the specified class as their subject.
    
    Specified by:
    
    getHasKeyAxioms in interface OWLAxiomIndex
    
    Parameters:
    
    owlClass - The subject of the has key axioms
    
    Returns:
    
    the axioms matching the search. The set is a copy of the data.
  - getObjectSubPropertyAxiomsForSubProperty
```
@Nonnull
public Set<OWLSubObjectPropertyOfAxiom> getObjectSubPropertyAxiomsForSubProperty(@Nonnull
                                                                                          OWLObjectPropertyExpression owlObjectPropertyExpression)
```
    Description copied from interface: OWLAxiomIndex
    
    Gets the OWLSubObjectPropertyOfAxiom s where the sub-property is equal to the specified property.
    
    Specified by:
    
    getObjectSubPropertyAxiomsForSubProperty in interface OWLAxiomIndex
    
    Parameters:
    
    owlObjectPropertyExpression - The property which is equal to the sub property of the retrieved axioms.
    
    Returns:
    
    the axioms matching the search. The set is a copy of the data.
  - getObjectSubPropertyAxiomsForSuperProperty
```
@Nonnull
public Set<OWLSubObjectPropertyOfAxiom> getObjectSubPropertyAxiomsForSuperProperty(@Nonnull
                                                                                            OWLObjectPropertyExpression owlObjectPropertyExpression)
```
    Description copied from interface: OWLAxiomIndex
    
    Gets the OWLSubObjectPropertyOfAxiom s where the super-property is equal to the specified property.
    
    Specified by:
    
    getObjectSubPropertyAxiomsForSuperProperty in interface OWLAxiomIndex
    
    Parameters:
    
    owlObjectPropertyExpression - The property which is equal to the super-property of the retrieved axioms.
    
    Returns:
    
    the axioms matching the search. The set is a copy of the data.
  - getObjectPropertyDomainAxioms
```
@Nonnull
public Set<OWLObjectPropertyDomainAxiom> getObjectPropertyDomainAxioms(@Nonnull
                                                                                OWLObjectPropertyExpression owlObjectPropertyExpression)
```
    Description copied from interface: OWLAxiomIndex
    
    Gets the OWLObjectPropertyDomainAxioms where the property is equal to the specified property.
    
    Specified by:
    
    getObjectPropertyDomainAxioms in interface OWLAxiomIndex
    
    Parameters:
    
    owlObjectPropertyExpression - The property which is equal to the property of the retrieved axioms.
    
    Returns:
    
    the axioms matching the search. The set is a copy of the data.
  - getObjectPropertyRangeAxioms
```
@Nonnull
public Set<OWLObjectPropertyRangeAxiom> getObjectPropertyRangeAxioms(@Nonnull
                                                                              OWLObjectPropertyExpression owlObjectPropertyExpression)
```
    Description copied from interface: OWLAxiomIndex
    
    Gets the OWLObjectPropertyRangeAxiom s where the property is equal to the specified property.
    
    Specified by:
    
    getObjectPropertyRangeAxioms in interface OWLAxiomIndex
    
    Parameters:
    
    owlObjectPropertyExpression - The property which is equal to the property of the retrieved axioms.
    
    Returns:
    
    the axioms matching the search. The set is a copy of the data.
  - getInverseObjectPropertyAxioms
```
@Nonnull
public Set<OWLInverseObjectPropertiesAxiom> getInverseObjectPropertyAxioms(@Nonnull
                                                                                    OWLObjectPropertyExpression owlObjectPropertyExpression)
```
    Description copied from interface: OWLAxiomIndex
    
    Gets the OWLInverseObjectPropertiesAxioms where the specified property is contained in the set returned by OWLNaryPropertyAxiom.getProperties() .
    
    Specified by:
    
    getInverseObjectPropertyAxioms in interface OWLAxiomIndex
    
    Parameters:
    
    owlObjectPropertyExpression - The property which is equal to the property of the retrieved axioms.
    
    Returns:
    
    the axioms matching the search. The set is a copy of the data.
  - getEquivalentObjectPropertiesAxioms
```
@Nonnull
public Set<OWLEquivalentObjectPropertiesAxiom> getEquivalentObjectPropertiesAxioms(@Nonnull
                                                                                            OWLObjectPropertyExpression owlObjectPropertyExpression)
```
    Description copied from interface: OWLAxiomIndex
    
    Gets the OWLEquivalentObjectPropertiesAxioms that make the specified property equivalent to some other object property expression(s).
    
    Specified by:
    
    getEquivalentObjectPropertiesAxioms in interface OWLAxiomIndex
    
    Parameters:
    
    owlObjectPropertyExpression - The property that the retrieved axioms make equivalent to some other property expressions.
    
    Returns:
    
    the axioms matching the search. The set is a copy of the data.
  - getDisjointObjectPropertiesAxioms
```
@Nonnull
public Set<OWLDisjointObjectPropertiesAxiom> getDisjointObjectPropertiesAxioms(@Nonnull
                                                                                        OWLObjectPropertyExpression owlObjectPropertyExpression)
```
    Description copied from interface: OWLAxiomIndex
    
    Gets the OWLDisjointObjectPropertiesAxioms that make the specified property disjoint with some other object property expression(s).
    
    Specified by:
    
    getDisjointObjectPropertiesAxioms in interface OWLAxiomIndex
    
    Parameters:
    
    owlObjectPropertyExpression - The property that the retrieved axioms makes disjoint to some other property expressions.
    
    Returns:
    
    the axioms matching the search. The set is a copy of the data.
  - getFunctionalObjectPropertyAxioms
```
@Nonnull
public Set<OWLFunctionalObjectPropertyAxiom> getFunctionalObjectPropertyAxioms(@Nonnull
                                                                                        OWLObjectPropertyExpression owlObjectPropertyExpression)
```
    Description copied from interface: OWLAxiomIndex
    
    Gets the OWLFunctionalObjectPropertyAxioms contained in this ontology that make the specified object property functional.
    
    Specified by:
    
    getFunctionalObjectPropertyAxioms in interface OWLAxiomIndex
    
    Parameters:
    
    owlObjectPropertyExpression - The property that is made functional by the axioms.
    
    Returns:
    
    the axioms matching the search. The set is a copy of the data.
  - getInverseFunctionalObjectPropertyAxioms
```
@Nonnull
public Set<OWLInverseFunctionalObjectPropertyAxiom> getInverseFunctionalObjectPropertyAxioms(@Nonnull
                                                                                                      OWLObjectPropertyExpression owlObjectPropertyExpression)
```
    Description copied from interface: OWLAxiomIndex
    
    Gets the OWLInverseFunctionalObjectPropertyAxioms contained in this ontology that make the specified object property inverse functional.
    
    Specified by:
    
    getInverseFunctionalObjectPropertyAxioms in interface OWLAxiomIndex
    
    Parameters:
    
    owlObjectPropertyExpression - The property that is made inverse functional by the axioms.
    
    Returns:
    
    the axioms matching the search. The set is a copy of the data.
  - getSymmetricObjectPropertyAxioms
```
@Nonnull
public Set<OWLSymmetricObjectPropertyAxiom> getSymmetricObjectPropertyAxioms(@Nonnull
                                                                                      OWLObjectPropertyExpression owlObjectPropertyExpression)
```
    Description copied from interface: OWLAxiomIndex
    
    Gets the OWLSymmetricObjectPropertyAxioms contained in this ontology that make the specified object property symmetric.
    
    Specified by:
    
    getSymmetricObjectPropertyAxioms in interface OWLAxiomIndex
    
    Parameters:
    
    owlObjectPropertyExpression - The property that is made symmetric by the axioms.
    
    Returns:
    
    the axioms matching the search. The set is a copy of the data.
  - getAsymmetricObjectPropertyAxioms
```
@Nonnull
public Set<OWLAsymmetricObjectPropertyAxiom> getAsymmetricObjectPropertyAxioms(@Nonnull
                                                                                        OWLObjectPropertyExpression owlObjectPropertyExpression)
```
    Description copied from interface: OWLAxiomIndex
    
    Gets the OWLAsymmetricObjectPropertyAxioms contained in this ontology that make the specified object property asymmetric.
    
    Specified by:
    
    getAsymmetricObjectPropertyAxioms in interface OWLAxiomIndex
    
    Parameters:
    
    owlObjectPropertyExpression - The property that is made asymmetric by the axioms.
    
    Returns:
    
    the axioms matching the search. The set is a copy of the data.
  - getReflexiveObjectPropertyAxioms
```
@Nonnull
public Set<OWLReflexiveObjectPropertyAxiom> getReflexiveObjectPropertyAxioms(@Nonnull
                                                                                      OWLObjectPropertyExpression owlObjectPropertyExpression)
```
    Description copied from interface: OWLAxiomIndex
    
    Gets the OWLReflexiveObjectPropertyAxioms contained in this ontology that make the specified object property reflexive.
    
    Specified by:
    
    getReflexiveObjectPropertyAxioms in interface OWLAxiomIndex
    
    Parameters:
    
    owlObjectPropertyExpression - The property that is made reflexive by the axioms.
    
    Returns:
    
    the axioms matching the search. The set is a copy of the data.
  - getIrreflexiveObjectPropertyAxioms
```
@Nonnull
public Set<OWLIrreflexiveObjectPropertyAxiom> getIrreflexiveObjectPropertyAxioms(@Nonnull
                                                                                          OWLObjectPropertyExpression owlObjectPropertyExpression)
```
    Description copied from interface: OWLAxiomIndex
    
    Gets the OWLIrreflexiveObjectPropertyAxioms contained in this ontology that make the specified object property irreflexive.
    
    Specified by:
    
    getIrreflexiveObjectPropertyAxioms in interface OWLAxiomIndex
    
    Parameters:
    
    owlObjectPropertyExpression - The property that is made irreflexive by the axioms.
    
    Returns:
    
    the axioms matching the search. The set is a copy of the data.
  - getTransitiveObjectPropertyAxioms
```
@Nonnull
public Set<OWLTransitiveObjectPropertyAxiom> getTransitiveObjectPropertyAxioms(@Nonnull
                                                                                        OWLObjectPropertyExpression owlObjectPropertyExpression)
```
    Description copied from interface: OWLAxiomIndex
    
    Gets the OWLTransitiveObjectPropertyAxioms contained in this ontology that make the specified object property transitive.
    
    Specified by:
    
    getTransitiveObjectPropertyAxioms in interface OWLAxiomIndex
    
    Parameters:
    
    owlObjectPropertyExpression - The property that is made transitive by the axioms.
    
    Returns:
    
    the axioms matching the search. The set is a copy of the data.
  - getDataSubPropertyAxiomsForSubProperty
```
@Nonnull
public Set<OWLSubDataPropertyOfAxiom> getDataSubPropertyAxiomsForSubProperty(@Nonnull
                                                                                      OWLDataProperty owlDataProperty)
```
    Description copied from interface: OWLAxiomIndex
    
    Gets the OWLSubDataPropertyOfAxioms where the sub-property is equal to the specified property.
    
    Specified by:
    
    getDataSubPropertyAxiomsForSubProperty in interface OWLAxiomIndex
    
    Parameters:
    
    owlDataProperty - The property which is equal to the sub property of the retrieved axioms.
    
    Returns:
    
    the axioms matching the search. The set is a copy of the data.
  - getDataSubPropertyAxiomsForSuperProperty
```
@Nonnull
public Set<OWLSubDataPropertyOfAxiom> getDataSubPropertyAxiomsForSuperProperty(@Nonnull
                                                                                        OWLDataPropertyExpression owlDataPropertyExpression)
```
    Description copied from interface: OWLAxiomIndex
    
    Gets the OWLSubDataPropertyOfAxioms where the super-property is equal to the specified property.
    
    Specified by:
    
    getDataSubPropertyAxiomsForSuperProperty in interface OWLAxiomIndex
    
    Parameters:
    
    owlDataPropertyExpression - The property which is equal to the super-property of the retrieved axioms.
    
    Returns:
    
    the axioms matching the search. The set is a copy of the data.
  - getDataPropertyDomainAxioms
```
@Nonnull
public Set<OWLDataPropertyDomainAxiom> getDataPropertyDomainAxioms(@Nonnull
                                                                            OWLDataProperty owlDataProperty)
```
    Description copied from interface: OWLAxiomIndex
    
    Gets the OWLDataPropertyDomainAxioms where the property is equal to the specified property.
    
    Specified by:
    
    getDataPropertyDomainAxioms in interface OWLAxiomIndex
    
    Parameters:
    
    owlDataProperty - The property which is equal to the property of the retrieved axioms.
    
    Returns:
    
    the axioms matching the search. The set is a copy of the data.
  - getDataPropertyRangeAxioms
```
@Nonnull
public Set<OWLDataPropertyRangeAxiom> getDataPropertyRangeAxioms(@Nonnull
                                                                          OWLDataProperty owlDataProperty)
```
    Description copied from interface: OWLAxiomIndex
    
    Gets the OWLDataPropertyRangeAxioms where the property is equal to the specified property.
    
    Specified by:
    
    getDataPropertyRangeAxioms in interface OWLAxiomIndex
    
    Parameters:
    
    owlDataProperty - The property which is equal to the property of the retrieved axioms.
    
    Returns:
    
    the axioms matching the search. The set is a copy of the data.
  - getEquivalentDataPropertiesAxioms
```
@Nonnull
public Set<OWLEquivalentDataPropertiesAxiom> getEquivalentDataPropertiesAxioms(@Nonnull
                                                                                        OWLDataProperty owlDataProperty)
```
    Description copied from interface: OWLAxiomIndex
    
    Gets the OWLEquivalentDataPropertiesAxioms that make the specified property equivalent to some other data property expression(s).
    
    Specified by:
    
    getEquivalentDataPropertiesAxioms in interface OWLAxiomIndex
    
    Parameters:
    
    owlDataProperty - The property that the retrieved axioms make equivalent to some other property expressions.
    
    Returns:
    
    the axioms matching the search. The set is a copy of the data.
  - getDisjointDataPropertiesAxioms
```
@Nonnull
public Set<OWLDisjointDataPropertiesAxiom> getDisjointDataPropertiesAxioms(@Nonnull
                                                                                    OWLDataProperty owlDataProperty)
```
    Description copied from interface: OWLAxiomIndex
    
    Gets the OWLDisjointDataPropertiesAxioms that make the specified property disjoint with some other data property expression(s).
    
    Specified by:
    
    getDisjointDataPropertiesAxioms in interface OWLAxiomIndex
    
    Parameters:
    
    owlDataProperty - The property that the retrieved axioms makes disjoint to some other property expressions.
    
    Returns:
    
    the axioms matching the search. The set is a copy of the data.
  - getFunctionalDataPropertyAxioms
```
@Nonnull
public Set<OWLFunctionalDataPropertyAxiom> getFunctionalDataPropertyAxioms(@Nonnull
                                                                                    OWLDataPropertyExpression owlDataPropertyExpression)
```
    Description copied from interface: OWLAxiomIndex
    
    Gets the OWLFunctionalDataPropertyAxioms contained in this ontology that make the specified data property functional.
    
    Specified by:
    
    getFunctionalDataPropertyAxioms in interface OWLAxiomIndex
    
    Parameters:
    
    owlDataPropertyExpression - The property that is made functional by the axioms.
    
    Returns:
    
    the axioms matching the search. The set is a copy of the data.
  - getClassAssertionAxioms
```
@Nonnull
public Set<OWLClassAssertionAxiom> getClassAssertionAxioms(@Nonnull
                                                                    OWLIndividual owlIndividual)
```
    Description copied from interface: OWLAxiomIndex
    
    Gets the OWLClassAssertionAxioms contained in this ontology that make the specified individual an instance of some class expression.
    
    Specified by:
    
    getClassAssertionAxioms in interface OWLAxiomIndex
    
    Parameters:
    
    owlIndividual - The individual that the returned axioms make an instance of some class expression.
    
    Returns:
    
    the axioms matching the search. The set is a copy of the data.
  - getClassAssertionAxioms
```
@Nonnull
public Set<OWLClassAssertionAxiom> getClassAssertionAxioms(@Nonnull
                                                                    OWLClassExpression owlClassExpression)
```
    Description copied from interface: OWLAxiomIndex
    
    Gets the OWLClassAssertionAxioms contained in this ontology that make the specified class expression, ce, a type for some individual.
    
    Specified by:
    
    getClassAssertionAxioms in interface OWLAxiomIndex
    
    Parameters:
    
    owlClassExpression - The class expression that the returned axioms make a type for some individual.
    
    Returns:
    
    the axioms matching the search. The set is a copy of the data.
  - getDataPropertyAssertionAxioms
```
@Nonnull
public Set<OWLDataPropertyAssertionAxiom> getDataPropertyAssertionAxioms(@Nonnull
                                                                                  OWLIndividual owlIndividual)
```
    Description copied from interface: OWLAxiomIndex
    
    Gets the OWLDataPropertyAssertionAxioms contained in this ontology that have the specified individual as the subject of the axiom.
    
    Specified by:
    
    getDataPropertyAssertionAxioms in interface OWLAxiomIndex
    
    Parameters:
    
    owlIndividual - The individual that the returned axioms have as a subject.
    
    Returns:
    
    the axioms matching the search. The set is a copy of the data.
  - getObjectPropertyAssertionAxioms
```
@Nonnull
public Set<OWLObjectPropertyAssertionAxiom> getObjectPropertyAssertionAxioms(@Nonnull
                                                                                      OWLIndividual owlIndividual)
```
    Description copied from interface: OWLAxiomIndex
    
    Gets the OWLObjectPropertyAssertionAxioms contained in this ontology that have the specified individual as the subject of the axiom.
    
    Specified by:
    
    getObjectPropertyAssertionAxioms in interface OWLAxiomIndex
    
    Parameters:
    
    owlIndividual - The individual that the returned axioms have as a subject.
    
    Returns:
    
    the axioms matching the search. The set is a copy of the data.
  - getNegativeObjectPropertyAssertionAxioms
```
@Nonnull
public Set<OWLNegativeObjectPropertyAssertionAxiom> getNegativeObjectPropertyAssertionAxioms(@Nonnull
                                                                                                      OWLIndividual owlIndividual)
```
    Description copied from interface: OWLAxiomIndex
    
    Gets the OWLNegativeObjectPropertyAssertionAxiom s contained in this ontology that have the specified individual as the subject of the axiom.
    
    Specified by:
    
    getNegativeObjectPropertyAssertionAxioms in interface OWLAxiomIndex
    
    Parameters:
    
    owlIndividual - The individual that the returned axioms have as a subject.
    
    Returns:
    
    the axioms matching the search. The set is a copy of the data.
  - getNegativeDataPropertyAssertionAxioms
```
@Nonnull
public Set<OWLNegativeDataPropertyAssertionAxiom> getNegativeDataPropertyAssertionAxioms(@Nonnull
                                                                                                  OWLIndividual owlIndividual)
```
    Description copied from interface: OWLAxiomIndex
    
    Gets the OWLNegativeDataPropertyAssertionAxiom s contained in this ontology that have the specified individual as the subject of the axiom.
    
    Specified by:
    
    getNegativeDataPropertyAssertionAxioms in interface OWLAxiomIndex
    
    Parameters:
    
    owlIndividual - The individual that the returned axioms have as a subject.
    
    Returns:
    
    the axioms matching the search. The set is a copy of the data.
  - getSameIndividualAxioms
```
@Nonnull
public Set<OWLSameIndividualAxiom> getSameIndividualAxioms(@Nonnull
                                                                    OWLIndividual owlIndividual)
```
    Description copied from interface: OWLAxiomIndex
    
    Gets the OWLSameIndividualAxioms contained in this ontology that make the specified individual the same as some other individual.
    
    Specified by:
    
    getSameIndividualAxioms in interface OWLAxiomIndex
    
    Parameters:
    
    owlIndividual - The individual that the returned axioms make the same as some other individual.
    
    Returns:
    
    the axioms matching the search. The set is a copy of the data.
  - getDifferentIndividualAxioms
```
@Nonnull
public Set<OWLDifferentIndividualsAxiom> getDifferentIndividualAxioms(@Nonnull
                                                                               OWLIndividual owlIndividual)
```
    Description copied from interface: OWLAxiomIndex
    
    Gets the OWLDifferentIndividualsAxioms contained in this ontology that make the specified individual different to some other individual.
    
    Specified by:
    
    getDifferentIndividualAxioms in interface OWLAxiomIndex
    
    Parameters:
    
    owlIndividual - The individual that the returned axioms make the different as some other individual.
    
    Returns:
    
    the axioms matching the search. The set is a copy of the data.
  - getDatatypeDefinitions
```
@Nonnull
public Set<OWLDatatypeDefinitionAxiom> getDatatypeDefinitions(@Nonnull
                                                                       OWLDatatype owlDatatype)
```
    Description copied from interface: OWLAxiomIndex
    
    Gets the OWLDatatypeDefinitionAxioms contained in this ontology that provide a definition for the specified datatype.
    
    Specified by:
    
    getDatatypeDefinitions in interface OWLAxiomIndex
    
    Parameters:
    
    owlDatatype - The datatype for which the returned axioms provide a definition.
    
    Returns:
    
    the axioms matching the search. The set is a copy of the data.
  - applyChange
```
@Nonnull
public ChangeApplied applyChange(@Nonnull
                                          OWLOntologyChange owlOntologyChange)
```
    Description copied from interface: HasApplyChange
    
    A convenience method that applies just one change to an ontology that is managed by this manager.
    
    Specified by:
    
    applyChange in interface HasApplyChange
    
    Parameters:
    
    owlOntologyChange - The change to be applied
    
    Returns:
    
    ChangeApplied.SUCCESSFULLY if the change is applied with success, ChangeApplied.UNSUCCESSFULLY otherwise.
  - applyChanges
```
@Nonnull
public ChangeApplied applyChanges(@Nonnull
                                           List<? extends OWLOntologyChange> list)
```
    Description copied from interface: HasApplyChanges
    
    Applies a list ontology changes to a collection of ontologies. Note that the ontologies need to be managed by this manager, since import closures, ontology ids and configurations might be affected by the changes, and they are held by the manager.
    
    Specified by:
    
    applyChanges in interface HasApplyChanges
    
    Parameters:
    
    list - The changes to be applied.
    
    Returns:
    
    ChangeApplied.SUCCESSFULLY if the axiom is added, ChangeApplied.UNSUCCESSFULLY otherwise.
  - addAxiom
```
@Nonnull
public ChangeApplied addAxiom(@Nonnull
                                       OWLAxiom owlAxiom)
```
    Description copied from interface: HasDirectAddAxiom
    
    A convenience method that adds a single axiom to an ontology. The appropriate AddAxiom change object is automatically generated.
    
    Specified by:
    
    addAxiom in interface HasDirectAddAxiom
    
    Parameters:
    
    owlAxiom - The axiom to be added
    
    Returns:
    
    ChangeApplied.SUCCESSFULLY if the axiom is added, ChangeApplied.UNSUCCESSFULLY otherwise.
  - addAxioms
```
public ChangeApplied addAxioms(@Nonnull
                               Set<? extends OWLAxiom> set)
```
    Description copied from interface: HasDirectAddAxioms
    
    A convenience method that adds a set of axioms to an ontology. The appropriate AddAxiom change objects are automatically generated.
    
    Specified by:
    
    addAxioms in interface HasDirectAddAxioms
    
    Parameters:
    
    set - The axioms to be added. Not null.
    
    Returns:
    
    ChangeApplied.SUCCESSFULLY if the axiom is added, ChangeApplied.UNSUCCESSFULLY otherwise.

Class ConcurrentOWLOntologyImpl

Constructor Summary

Method Summary

Methods inherited from class java.lang.Object

Constructor Detail

ConcurrentOWLOntologyImpl

Method Detail

trimToSize

accept

accept

hashCode

equals

getOWLOntologyManager

setOWLOntologyManager

getOntologyID

isAnonymous

getAnnotations

getDirectImportsDocuments

getDirectImports

getImports

getImportsClosure

getImportsDeclarations

isEmpty

getTBoxAxioms

getABoxAxioms

getRBoxAxioms

getGeneralClassAxioms

getSignature

getSignature

isDeclared

isDeclared

saveOntology

saveOntology

saveOntology

saveOntology

saveOntology

saveOntology

saveOntology

saveOntology

getNestedClassExpressions

accept

accept

isTopEntity

isBottomEntity

toString

compareTo

containsEntityInSignature

getAnonymousIndividuals

getClassesInSignature

getObjectPropertiesInSignature

getDataPropertiesInSignature

getIndividualsInSignature

getDatatypesInSignature

getAnnotationPropertiesInSignature

getAxioms

getAxiomCount

getLogicalAxioms

getLogicalAxiomCount

getAxioms

getAxiomCount

containsAxiom

getAxiomsIgnoreAnnotations

getReferencingAxioms

getAxioms

getAxioms

getAxioms

getAxioms

getAxioms

getAxioms

getAxioms

getLogicalAxioms

getAxioms

containsAxiom

getAxioms

getAxiomCount

getLogicalAxioms

getLogicalAxiomCount

getAxioms

getAxiomCount

containsAxiom