Deprecated API

Contents

• Deprecated Interfaces
• Deprecated Classes
• Deprecated Enums
• Deprecated Exceptions
• Deprecated Fields
• Deprecated Methods
• Deprecated Constructors
• Deprecated Enum Constants

Deprecated Interfaces

Interface and Description
org.semanticweb.owlapi.model.OWLAnnotationPropertyProvider use AnnotationPropertyProvider
org.semanticweb.owlapi.model.OWLAnonymousIndividualByIdProvider use AnonymousIndividualByIdProvider
org.semanticweb.owlapi.model.OWLAnonymousIndividualProvider use AnonymousIndividualProvider
org.semanticweb.owlapi.model.OWLClassProvider use ClassProvider
org.semanticweb.owlapi.model.OWLDataPropertyProvider use DataPropertyProvider
org.semanticweb.owlapi.model.OWLDatatypeProvider use DatatypeProvider
org.semanticweb.owlapi.model.OWLEntityByTypeProvider use EntityByTypeProvider
org.semanticweb.owlapi.model.OWLEntityProvider use EntityProvider
org.semanticweb.owlapi.model.OWLLogicalEntity this interface is redundant
org.semanticweb.owlapi.model.OWLNamedIndividualProvider use NamedIndividualProvider
org.semanticweb.owlapi.model.OWLObjectPropertyProvider use ObjectPropertyProvider
org.semanticweb.owlapi.model.OWLOntologyFormat this interface is here only to help with backwards compatibility
org.semanticweb.owlapi.vocab.PrefixOWLOntologyFormat use PrefixDocumentFormat instead
org.semanticweb.owlapi.model.SWRLDataFactory use SWRLProvider

Deprecated Classes

Class and Description
org.semanticweb.owlapi.util.DeprecatedOWLEntityCollector the old OWLEntityCollector is still used in non trivial ways in third party software. For new code, use OWLEntityCollector.
uk.ac.manchester.cs.owlapi.dlsyntax.DLSyntaxHTMLOntologyFormat use DLSyntaxHTMLDocumentFormat
uk.ac.manchester.cs.owlapi.dlsyntax.DLSyntaxOntologyFormat use DLSyntaxDocumentFormat
de.uulm.ecs.ai.owlapi.krssparser.KRSS2OntologyFormat use KRSS2DocumentFormat
org.coode.owl.krssparser.KRSSOntologyFormat use KRSSDocumentFormat
org.obolibrary.owl.LabelFunctionalFormat use LabelFunctionalDocumentFormat
org.coode.owlapi.latex.LatexAxiomsListOntologyFormat use LatexAxiomsListDocumentFormat
org.coode.owlapi.latex.LatexOntologyFormat use LatexDocumentFormat
org.coode.owlapi.manchesterowlsyntax.ManchesterOWLSyntaxClassExpressionParser use ManchesterOWLSyntaxClassExpressionParser
org.coode.owlapi.manchesterowlsyntax.ManchesterOWLSyntaxClassFrameParser use ManchesterOWLSyntaxClassFrameParser
org.coode.owlapi.manchesterowlsyntax.ManchesterOWLSyntaxEditorParser use OWLManager.createManchesterParser()
uk.ac.manchester.cs.owl.owlapi.mansyntaxrenderer.ManchesterOWLSyntaxFrameRenderer use ManchesterOWLSyntaxFrameRenderer
org.coode.owlapi.manchesterowlsyntax.ManchesterOWLSyntaxFramesParser use ManchesterOWLSyntaxFramesParser
org.coode.owlapi.manchesterowlsyntax.ManchesterOWLSyntaxInlineAxiomParser use ManchesterOWLSyntaxInlineAxiomParser
uk.ac.manchester.cs.owl.owlapi.mansyntaxrenderer.ManchesterOWLSyntaxObjectRenderer use ManchesterOWLSyntaxObjectRenderer
org.coode.owlapi.manchesterowlsyntax.ManchesterOWLSyntaxOntologyFormat use ManchesterSyntaxDocumentFormat
org.coode.owlapi.manchesterowlsyntax.ManchesterOWLSyntaxOntologyParser use ManchesterOWLSyntaxOntologyParser
uk.ac.manchester.cs.owl.owlapi.mansyntaxrenderer.ManchesterOWLSyntaxRenderer use ManchesterOWLSyntaxRenderer
org.semanticweb.owlapi.util.NonMappingOntologyIRIMapper not useful. If no mapping is found, the code already returns the input IRI.
org.coode.owlapi.obo.parser.OBOOntologyFormat use OBODocumentFormat
org.semanticweb.owlapi.io.OWLFunctionalSyntaxOntologyFormat use FunctionalSyntaxDocumentFormat
org.semanticweb.owlapi.io.OWLXMLOntologyFormat use OWLXMLDocumentFormat
org.semanticweb.owlapi.io.RDFXMLOntologyFormat use RDFXMLDocumentFormat
org.coode.owlapi.turtle.TurtleOntologyFormat use TurtleDocumentFormat

Deprecated Enums

Enum and Description
org.coode.owlapi.manchesterowlsyntax.ManchesterOWLSyntax use ManchesterOWLSyntax

Deprecated Exceptions

Exceptions and Description
org.semanticweb.owlapi.expression.ParserException use ParserException

Deprecated Fields

Field and Description
org.coode.owlapi.obo12.parser.OBOVocabulary.ANNOTATION_URI_BASE Use OBOVocabulary.OBO_IRI_BASE
org.semanticweb.owlapi.search.Filters.annotations use OWLAxiomIndex.annotationAssertionAxioms(org.semanticweb.owlapi.model.OWLAnnotationSubject) in place of this filter as it is much faster, thanks to indexing.
org.coode.owlapi.obo12.parser.OBOVocabulary.ONTOLOGY_URI_BASE Use OBOVocabulary.OBO_IRI_BASE

Deprecated Methods

Method and Description
org.semanticweb.owlapi.model.OWLOntologyManager.addIRIMapper(OWLOntologyIRIMapper) use getIRIMappers().add() instead
org.semanticweb.owlapi.model.OWLOntologyManager.addOntologyStorer(OWLStorerFactory) use getOntologyStorers().add() instead
org.semanticweb.owlapi.util.OWLAPIPreconditions.checkNotNull(Optional<T>, String) use OWLAPIPreconditions.checkNotNull(Object, Supplier)
org.semanticweb.owlapi.model.OWLOntologyManager.clearIRIMappers() use getIRIMappers().clear() instead
org.semanticweb.owlapi.model.OWLOntologyManager.clearOntologyStorers() use getOntologyStorers().clear() instead
org.semanticweb.owlapi.model.OWLSignatureBooleanArgs.containsAnnotationPropertyInSignature(IRI, boolean) use OWLSignature.containsAnnotationPropertyInSignature(IRI, Imports)
org.semanticweb.owlapi.model.OWLAxiomCollectionBooleanArgs.containsAxiom(OWLAxiom, boolean) use OWLAxiomCollection.containsAxiom(OWLAxiom, Imports, AxiomAnnotations)
org.semanticweb.owlapi.model.OWLAxiomCollectionBooleanArgs.containsAxiomIgnoreAnnotations(OWLAxiom, boolean) use OWLAxiomCollection.containsAxiom(OWLAxiom, Imports, AxiomAnnotations)
org.semanticweb.owlapi.model.OWLSignatureBooleanArgs.containsClassInSignature(IRI, boolean) use OWLSignature.containsClassInSignature(IRI, Imports)
org.semanticweb.owlapi.model.OWLSignatureBooleanArgs.containsDataPropertyInSignature(IRI, boolean) use OWLSignature.containsDataPropertyInSignature(IRI, Imports)
org.semanticweb.owlapi.model.OWLSignatureBooleanArgs.containsDatatypeInSignature(IRI, boolean) use OWLSignature.containsDatatypeInSignature(IRI, Imports)
org.semanticweb.owlapi.model.OWLSignatureBooleanArgs.containsEntityInSignature(IRI, boolean) use OWLSignature.containsEntityInSignature(IRI, Imports)
org.semanticweb.owlapi.model.OWLSignatureBooleanArgs.containsEntityInSignature(OWLEntity, boolean) use OWLSignature.containsEntityInSignature(OWLEntity, Imports)
org.semanticweb.owlapi.model.OWLSignatureBooleanArgs.containsIndividualInSignature(IRI, boolean) use OWLSignature.containsIndividualInSignature(IRI, Imports)
org.semanticweb.owlapi.model.OWLSignatureBooleanArgs.containsObjectPropertyInSignature(IRI, boolean) use OWLSignature.containsObjectPropertyInSignature(IRI, Imports)
org.semanticweb.owlapi.model.OWLSignature.containsReference(OWLEntity) use HasContainsEntityInSignature.containsEntityInSignature(OWLEntity)
org.semanticweb.owlapi.model.OWLSignatureBooleanArgs.containsReference(OWLEntity, boolean) use OWLSignature.containsEntityInSignature(OWLEntity, Imports)
org.semanticweb.owlapi.model.OWLSignature.containsReference(OWLEntity, Imports) use OWLSignature.containsEntityInSignature(OWLEntity, Imports)
org.semanticweb.owlapi.model.OWLSignatureBooleanArgs.getAnnotationPropertiesInSignature(boolean) use OWLSignature.annotationPropertiesInSignature(Imports)
org.semanticweb.owlapi.util.DeprecatedOWLEntityCollector.getAnonymousIndividuals()
org.semanticweb.owlapi.model.OWLAxiomCollectionBooleanArgs.getAxiomCount(AxiomType<T>, boolean) use OWLAxiomCollection.getAxiomCount(AxiomType, Imports)
org.semanticweb.owlapi.model.OWLAxiomCollectionBooleanArgs.getAxiomCount(boolean) use OWLAxiomCollection.getAxiomCount(Imports)
org.semanticweb.owlapi.model.OWLAxiomCollectionBooleanArgs.getAxioms(AxiomType<T>, boolean) use OWLAxiomCollection.axioms(AxiomType, Imports)
org.semanticweb.owlapi.model.OWLAxiomCollectionBooleanArgs.getAxioms(boolean) use OWLAxiomCollection.axioms(Imports) instead
org.semanticweb.owlapi.model.OWLAxiomCollectionBooleanArgs.getAxioms(OWLAnnotationProperty, boolean) use OWLAxiomCollection.axioms(OWLAnnotationProperty, Imports) instead
org.semanticweb.owlapi.model.OWLAxiomCollectionBooleanArgs.getAxioms(OWLClass, boolean) use OWLAxiomCollection.axioms(OWLClass, Imports) instead
org.semanticweb.owlapi.model.OWLAxiomCollectionBooleanArgs.getAxioms(OWLDataProperty, boolean) use OWLAxiomCollection.axioms(OWLDataProperty, Imports) instead
org.semanticweb.owlapi.model.OWLAxiomCollectionBooleanArgs.getAxioms(OWLDatatype, boolean) use OWLAxiomCollection.axioms(OWLDatatype, Imports) instead
org.semanticweb.owlapi.model.OWLAxiomCollectionBooleanArgs.getAxioms(OWLIndividual, boolean) use OWLAxiomCollection.axioms(OWLIndividual, Imports) instead
org.semanticweb.owlapi.model.OWLAxiomCollectionBooleanArgs.getAxioms(OWLObjectPropertyExpression, boolean) use OWLAxiomCollection.axioms(OWLObjectPropertyExpression, Imports) instead
org.semanticweb.owlapi.model.OWLAxiomCollectionBooleanArgs.getAxiomsIgnoreAnnotations(OWLAxiom, boolean) use OWLAxiomCollection.axiomsIgnoreAnnotations(OWLAxiom, Imports)
org.semanticweb.owlapi.model.OWLSignatureBooleanArgs.getClassesInSignature(boolean) use OWLSignature.classesInSignature(Imports)
org.semanticweb.owlapi.model.OWLNaryClassAxiom.getClassExpressionsAsList() use HasOperands.getOperandsAsList()
org.semanticweb.owlapi.model.OWLSignatureBooleanArgs.getDataPropertiesInSignature(boolean) use OWLSignature.dataPropertiesInSignature(Imports)
org.semanticweb.owlapi.model.OWLSignatureBooleanArgs.getDatatypesInSignature(boolean) use OWLSignature.datatypesInSignature(Imports)
org.semanticweb.owlapi.model.OWLVisitorBase.getDefaultReturnValue(Object) use #doDefault(Object) instead
org.semanticweb.owlapi.profiles.OWLProfileViolationVisitor.getDefaultReturnValue(OWLProfileViolation) use #doDefault(Object) instead
org.semanticweb.owlapi.model.OWLSignatureBooleanArgs.getEntitiesInSignature(IRI, boolean) use OWLSignature.entitiesInSignature(IRI, Imports)
org.semanticweb.owlapi.model.OWLSignatureBooleanArgs.getIndividualsInSignature(boolean) use OWLSignature.individualsInSignature(Imports)
org.semanticweb.owlapi.io.DocumentSources.getInputStream(IRI, OWLOntologyLoaderConfiguration) use DocumentSources.getInputStream(IRI, OWLOntologyLoaderConfiguration, String) instead
org.semanticweb.owlapi.model.OWLAxiomCollectionBooleanArgs.getLogicalAxiomCount(boolean) use OWLAxiomCollection.getLogicalAxiomCount(Imports)
org.semanticweb.owlapi.model.OWLAxiomCollectionBooleanArgs.getLogicalAxioms(boolean) use OWLAxiomCollection.logicalAxioms(Imports)
org.semanticweb.owlapi.model.OWLSignatureBooleanArgs.getObjectPropertiesInSignature(boolean) use OWLSignature.objectPropertiesInSignature(Imports)
org.semanticweb.owlapi.model.OWLSignatureBooleanArgs.getReferencedAnonymousIndividuals(boolean) use OWLSignature.referencedAnonymousIndividuals(Imports)
org.semanticweb.owlapi.model.OWLAxiomCollectionBooleanArgs.getReferencingAxioms(OWLPrimitive, boolean) use OWLAxiomCollection.referencingAxioms(OWLPrimitive, Imports)
org.semanticweb.owlapi.model.OWLObjectPropertyExpression.getSimplified() Since it is not legal to apply ObjectInverseOf to anything other than an Object Property, all object properties are always in the simplified form.
org.semanticweb.owlapi.model.OWLHasValueRestriction.getValue() use HasFiller.getFiller() instead
org.semanticweb.owlapi.model.OWLOntologyManager.getVersions(IRI) use OWLOntologyManager.versions(IRI)
org.semanticweb.owlapi.model.OWLVisitorBase.handleDefault(Object) use #doDefault(Object) instead
org.semanticweb.owlapi.util.mansyntax.ManchesterOWLSyntaxParser.parseClassAxiom() use ManchesterOWLSyntaxParser.parseAxiom(). parseClassAxiom() only casts the result of parseAxiom() to OWLClassAxiom.
org.coode.owlapi.manchesterowlsyntax.ManchesterOWLSyntaxEditorParser.parseClassExpressionList(boolean) use ManchesterOWLSyntaxParserImpl.parseClassExpressionList()
org.semanticweb.owlapi.model.HasRemoveAxiom.removeAxiom(OWLOntology, OWLAxiom) use OWLOntology.removeAxiom(OWLAxiom)
org.semanticweb.owlapi.model.OWLOntologyManager.removeIRIMapper(OWLOntologyIRIMapper) use getIRIMappers().remove() instead
org.semanticweb.owlapi.model.OWLOntologyManager.removeOntologyStorer(OWLStorerFactory) use getOntologyStorers().remove() instead
org.obolibrary.obo2owl.OwlStringTools.translate(Collection<OWLAxiom>, OWLOntologyManager) use OwlStringTools.translate(Collection)

Deprecated Constructors

Constructor and Description
org.obolibrary.oboformat.model.Clause() use Clause(String). Using this constructor makes the hashcode variable.
org.semanticweb.owlapi.util.DeprecatedOWLEntityCollector()

Deprecated Enum Constants

Enum Constant and Description
org.semanticweb.owlapi.vocab.SKOSVocabulary.COLLECTABLEPROPERTY No longer used
org.semanticweb.owlapi.vocab.SKOSVocabulary.COMMENT No longer used
org.semanticweb.owlapi.vocab.SKOSVocabulary.DOCUMENT No longer used
org.semanticweb.owlapi.vocab.SKOSVocabulary.IMAGE No longer used
org.semanticweb.owlapi.vocab.SKOSVocabulary.RESOURCE No longer used