Constructs an VariantContext from an Variant and Seq[Genotype] and DatabaseVariantAnnotation
Constructs an VariantContext from an Variant and Seq[Genotype] and DatabaseVariantAnnotation
Variant which is used to construct the ReferencePosition
Seq[Genotype]
Option[DatabaseVariantAnnotation]
VariantContext corresponding to the Variant
Constructs an VariantContext from an Variant
Constructs an VariantContext from an Variant
Variant which is used to construct the ReferencePosition
VariantContext corresponding to the Variant
Constructs an VariantContext from locus data.
Constructs an VariantContext from locus data. Used in merger process.
Nested tuple containing (locus on reference, (variants at site, genotypes at site, optional domain annotation at site))
VariantContext corresponding to the data above.
Builds a variant context off of a set of genotypes.
Builds a variant context off of a set of genotypes. Builds variants from the genotypes.
List of genotypes to build variant context from.
A variant context corresponding to the variants and genotypes at this site.
Genotypes must be at the same position.
Note: VariantContext inherits its name from the Picard VariantContext, and is not related to the SparkContext object. If you're looking for the latter, see org.bdgenomics.adam.rdd.variation.VariationContext