org.bdgenomics.adam.models

SequenceRecord

class SequenceRecord extends Serializable

Utility class within the SequenceDictionary; represents unique reference name-to-id correspondence

Linear Supertypes
Serializable, Serializable, AnyRef, Any
Ordering
  1. Alphabetic
  2. By inheritance
Inherited
  1. SequenceRecord
  2. Serializable
  3. Serializable
  4. AnyRef
  5. Any
  1. Hide All
  2. Show all
Learn more about member selection
Visibility
  1. Public
  2. All

Instance Constructors

  1. new SequenceRecord(name: String, length: Long, url: Option[String] = scala.None, md5: Option[String] = scala.None, refseq: Option[String] = scala.None, genbank: Option[String] = scala.None, assembly: Option[String] = scala.None, species: Option[String] = scala.None)

Value Members

  1. final def !=(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef
  2. final def !=(arg0: Any): Boolean

    Definition Classes
    Any
  3. final def ##(): Int

    Definition Classes
    AnyRef → Any
  4. final def ==(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef
  5. final def ==(arg0: Any): Boolean

    Definition Classes
    Any
  6. final def asInstanceOf[T0]: T0

    Definition Classes
    Any
  7. val assembly: Option[String]

  8. def clone(): AnyRef

    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  9. final def eq(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef
  10. def equals(o: Any): Boolean

    Definition Classes
    SequenceRecord → AnyRef → Any
  11. def finalize(): Unit

    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )
  12. val genbank: Option[String]

  13. final def getClass(): Class[_]

    Definition Classes
    AnyRef → Any
  14. def hashCode(): Int

    Definition Classes
    AnyRef → Any
  15. final def isInstanceOf[T0]: Boolean

    Definition Classes
    Any
  16. val length: Long

  17. val md5: Option[String]

  18. val name: String

  19. final def ne(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef
  20. final def notify(): Unit

    Definition Classes
    AnyRef
  21. final def notifyAll(): Unit

    Definition Classes
    AnyRef
  22. val refseq: Option[String]

  23. val species: Option[String]

  24. final def synchronized[T0](arg0: ⇒ T0): T0

    Definition Classes
    AnyRef
  25. def toSAMSequenceRecord: SAMSequenceRecord

    Converts this sequence record into a SAM sequence record.

    Converts this sequence record into a SAM sequence record.

    returns

    A SAM formatted sequence record.

  26. def toString(): String

    Definition Classes
    SequenceRecord → AnyRef → Any
  27. val url: Option[String]

  28. final def wait(): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  29. final def wait(arg0: Long, arg1: Int): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  30. final def wait(arg0: Long): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

Inherited from Serializable

Inherited from Serializable

Inherited from AnyRef

Inherited from Any

Ungrouped