the (unique) identifier of the Transcript
Common names for the transcript
The (unique) identifier of the gene to which the transcript belongs
The set of exons in the transcript model; each of these contain a reference region whose coordinates are in genomic space.
the set of CDS regions (the subset of the exons that are coding) for this transcript
the set of CDS regions (the subset of the exons that are coding) for this transcript
The set of exons in the transcript model; each of these contain a reference region whose coordinates are in genomic space.
Returns the _coding sequence_ of the Transcript -- essentially, the subset of the exon(s) after the translation-start codon and before the translation-stop codon, as annotated in the Exon and CDS objects of the transcript.
Returns the _coding sequence_ of the Transcript -- essentially, the subset of the exon(s) after the translation-start codon and before the translation-stop codon, as annotated in the Exon and CDS objects of the transcript.
The reference sequence (e.g. chromosomal sequence) with respect to which the Transcript's coordinates or locators are given
the String representation of this Transcript's spliced mRNA sequence
Returns the _exonic_ sequence of the Transcript -- basically, the sequences of each exon concatenated together, with the intervening intronic sequences omitted.
Returns the _exonic_ sequence of the Transcript -- basically, the sequences of each exon concatenated together, with the intervening intronic sequences omitted.
The reference sequence (e.g. chromosomal sequence) with respect to which the Transcript's coordinates or locators are given
the String representation of this Transcript's spliced mRNA sequence
Returns the concatenated sequence of the exons of the Transcript.
Returns the concatenated sequence of the exons of the Transcript.
The reference sequence (e.g. chromosomal sequence) with respect to which the Transcript's coordinates or locators are given
the String representation of this Transcript's spliced mRNA sequence
The (unique) identifier of the gene to which the transcript belongs
the (unique) identifier of the Transcript
Common names for the transcript
A transcript model (here represented as a value of the Transcript class) is a simple, hierarchical model containing a collection of exon models as well as an associated gene identifier, transcript identifier, and a set of common names (synonyms).
the (unique) identifier of the Transcript
Common names for the transcript
The (unique) identifier of the gene to which the transcript belongs
The set of exons in the transcript model; each of these contain a reference region whose coordinates are in genomic space.
the set of CDS regions (the subset of the exons that are coding) for this transcript