Converts a single ADAM record into a SAM record.
Converts a single ADAM record into a SAM record.
ADAM formatted alignment record to convert.
SAM file header to use.
Returns the record converted to SAMtools format. Can be used for output to SAM/BAM.
Converts a single record to FASTQ.
Converts a single record to FASTQ. FASTQ format is:
Read to convert to FASTQ.
Returns this read in string form.
Creates a SAM formatted header.
Creates a SAM formatted header. This can be used with SAM or BAM files.
Reference sequence dictionary to use for conversion.
Dictionary containing record groups.
Converted SAM formatted record.