org.bdgenomics.adam.rdd.read.recalibration

Recalibrator

class Recalibrator extends (DecadentRead) ⇒ AlignmentRecord with Serializable

Linear Supertypes
Serializable, Serializable, (DecadentRead) ⇒ AlignmentRecord, AnyRef, Any
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Inherited
  1. Recalibrator
  2. Serializable
  3. Serializable
  4. Function1
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Instance Constructors

  1. new Recalibrator(table: RecalibrationTable, minAcceptableQuality: QualityScore)

Value Members

  1. final def !=(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef
  2. final def !=(arg0: Any): Boolean

    Definition Classes
    Any
  3. final def ##(): Int

    Definition Classes
    AnyRef → Any
  4. final def ==(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef
  5. final def ==(arg0: Any): Boolean

    Definition Classes
    Any
  6. def andThen[A](g: (AlignmentRecord) ⇒ A): (DecadentRead) ⇒ A

    Definition Classes
    Function1
    Annotations
    @unspecialized()
  7. def apply(read: DecadentRead): AlignmentRecord

    Definition Classes
    Recalibrator → Function1
  8. final def asInstanceOf[T0]: T0

    Definition Classes
    Any
  9. def clone(): AnyRef

    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  10. def compose[A](g: (A) ⇒ DecadentRead): (A) ⇒ AlignmentRecord

    Definition Classes
    Function1
    Annotations
    @unspecialized()
  11. def computeQual(read: DecadentRead): Seq[QualityScore]

  12. final def eq(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef
  13. def equals(arg0: Any): Boolean

    Definition Classes
    AnyRef → Any
  14. def finalize(): Unit

    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )
  15. final def getClass(): Class[_]

    Definition Classes
    AnyRef → Any
  16. def hashCode(): Int

    Definition Classes
    AnyRef → Any
  17. final def isInstanceOf[T0]: Boolean

    Definition Classes
    Any
  18. val minAcceptableQuality: QualityScore

  19. final def ne(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef
  20. final def notify(): Unit

    Definition Classes
    AnyRef
  21. final def notifyAll(): Unit

    Definition Classes
    AnyRef
  22. final def synchronized[T0](arg0: ⇒ T0): T0

    Definition Classes
    AnyRef
  23. val table: RecalibrationTable

  24. def toString(): String

    Definition Classes
    Function1 → AnyRef → Any
  25. final def wait(): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  26. final def wait(arg0: Long, arg1: Int): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  27. final def wait(arg0: Long): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

Inherited from Serializable

Inherited from Serializable

Inherited from (DecadentRead) ⇒ AlignmentRecord

Inherited from AnyRef

Inherited from Any

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