org.bdgenomics.adam.projections

# VariantCallingAnnotationsField

#### class VariantCallingAnnotationsField extends FieldEnumeration

Linear Supertypes
FieldEnumeration, Enumeration, Serializable, Serializable, AnyRef, Any
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1. VariantCallingAnnotationsField
2. FieldEnumeration
3. Enumeration
4. Serializable
5. Serializable
6. AnyRef
7. Any

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### Instance Constructors

1. #### new VariantCallingAnnotationsField()

### Type Members

1. #### class SchemaVal extends Val with FieldValue

   Definition Classes
     FieldEnumeration

2. #### class Val extends Value with Serializable

   Attributes
     protected
   Definition Classes
     Enumeration
   Annotations
     @SerialVersionUID( -3501153230598116017L )

3. #### abstract class Value extends Ordered[Value] with Serializable

   Definition Classes
     Enumeration
   Annotations
     @SerialVersionUID( 7091335633555234129L )

4. #### class ValueSet extends AbstractSet[Value] with SortedSet[Value] with SortedSetLike[Value, ValueSet] with Serializable

   Definition Classes
     Enumeration

### Value Members

1. #### final def !=(arg0: AnyRef): Boolean

   Definition Classes
     AnyRef

2. #### final def !=(arg0: Any): Boolean

   Definition Classes
     Any

3. #### final def ##(): Int

   Definition Classes
     AnyRef → Any

4. #### final def ==(arg0: AnyRef): Boolean

   Definition Classes
     AnyRef

5. #### final def ==(arg0: Any): Boolean

   Definition Classes
     Any

6. #### final def SchemaValue: SchemaVal

   Attributes
     protected
   Definition Classes
     FieldEnumeration

7. #### final def Value(i: Int, name: String): Value

   Attributes
     protected
   Definition Classes
     Enumeration

8. #### final def Value(name: String): Value

   Attributes
     protected
   Definition Classes
     Enumeration

9. #### final def Value(i: Int): Value

   Attributes
     protected
   Definition Classes
     Enumeration

10. #### final def Value: Value

    Attributes
      protected
    Definition Classes
      Enumeration

11. #### val alleleCountMLE: SchemaVal

12. #### val alleleFrequencyMLE: SchemaVal

13. #### final def apply(x: Int): Value

    Definition Classes
      Enumeration

14. #### final def asInstanceOf[T0]: T0

    Definition Classes
      Any

15. #### val baseQRankSum: SchemaVal

16. #### val clippingRankSum: SchemaVal

17. #### def clone(): AnyRef

    Attributes
      protected[java.lang]
    Definition Classes
      AnyRef
    Annotations
      @throws( ... )

18. #### val culprit: SchemaVal

19. #### val downsampled: SchemaVal

20. #### final def eq(arg0: AnyRef): Boolean

    Definition Classes
      AnyRef

21. #### def equals(arg0: Any): Boolean

    Definition Classes
      AnyRef → Any

22. #### def finalize(): Unit

    Attributes
      protected[java.lang]
    Definition Classes
      AnyRef
    Annotations
      @throws( classOf[java.lang.Throwable] )

23. #### final def getClass(): Class[_]

    Definition Classes
      AnyRef → Any

24. #### val haplotypeScore: SchemaVal

25. #### def hashCode(): Int

    Definition Classes
      AnyRef → Any

26. #### val inbreedingCoefficient: SchemaVal

27. #### final def isInstanceOf[T0]: Boolean

    Definition Classes
      Any

28. #### val mapq0Reads: SchemaVal

29. #### final def maxId: Int

    Definition Classes
      Enumeration

30. #### val mqRankSum: SchemaVal

31. #### final def ne(arg0: AnyRef): Boolean

    Definition Classes
      AnyRef

32. #### var nextId: Int

    Attributes
      protected
    Definition Classes
      Enumeration

33. #### var nextName: Iterator[String]

    Attributes
      protected
    Definition Classes
      Enumeration

34. #### final def notify(): Unit

    Definition Classes
      AnyRef

35. #### final def notifyAll(): Unit

    Definition Classes
      AnyRef

36. #### val readDepth: SchemaVal

37. #### val readPositionRankSum: SchemaVal

38. #### def readResolve(): AnyRef

    Attributes
      protected
    Definition Classes
      Enumeration

39. #### val recordSchema: Schema

    Definition Classes
      FieldEnumeration

40. #### val rmsMapQ: SchemaVal

41. #### final def synchronized[T0](arg0: ⇒ T0): T0

    Definition Classes
      AnyRef

42. #### def toString(): String

    Definition Classes
      Enumeration → AnyRef → Any

43. #### val usedForNegativeTrainingSet: SchemaVal

44. #### val usedForPositiveTrainingSet: SchemaVal

45. #### def values: ValueSet

    Definition Classes
      Enumeration

46. #### val variantCallErrorProbability: SchemaVal

47. #### val variantFilters: SchemaVal

48. #### val variantIsPassing: SchemaVal

49. #### val variantQualityByDepth: SchemaVal

50. #### val vqslod: SchemaVal

51. #### final def wait(): Unit

    Definition Classes
      AnyRef
    Annotations
      @throws( ... )

52. #### final def wait(arg0: Long, arg1: Int): Unit

    Definition Classes
      AnyRef
    Annotations
      @throws( ... )

53. #### final def wait(arg0: Long): Unit

    Definition Classes
      AnyRef
    Annotations
      @throws( ... )

54. #### final def withName(s: String): Value

    Definition Classes
      Enumeration

### Inherited from FieldEnumeration

### Inherited from Enumeration

### Inherited from Serializable

### Inherited from AnyRef

### Inherited from Any

### Ungrouped