• Component
• ComponentXMLConverter
• Dataset
• ModificationCategory
• ModificationCondition
• ModificationConditionImpl
• ModificationLinkage
• ModificationOccurrenceType
• ModifiedCompound
• ModifiedCompoundImpl
• ModifiedCompoundXMLConverter
• ProteinModification
• ProteinModificationIdentifier
• ProteinModificationImpl
• ProteinModificationImpl.Builder
• ProteinModificationRegistry
• ProteinModificationXmlReader
• Site
• StructureAtom
• StructureAtomLinkage
• StructureAtomXMLConverter
• StructureGroup
• StructureGroupXMLConverter
• StructureUtil