Hierarchy For All Packages

Package Hierarchies:

• org.biojava.nbio.phosphosite,
• org.biojava.nbio.protmod,
• org.biojava.nbio.protmod.io,
• org.biojava.nbio.protmod.structure

Class Hierarchy

• java.lang.Object
  • org.biojava.nbio.protmod.Component
  • org.biojava.nbio.protmod.io.ComponentXMLConverter
  • org.biojava.nbio.phosphosite.Dataset
  • org.biojava.nbio.protmod.ModificationConditionImpl (implements org.biojava.nbio.protmod.ModificationCondition)
  • org.biojava.nbio.protmod.ModificationLinkage
  • org.biojava.nbio.protmod.structure.ModifiedCompoundImpl (implements java.lang.Comparable<T>, org.biojava.nbio.protmod.structure.ModifiedCompound, java.io.Serializable)
  • org.biojava.nbio.protmod.io.ModifiedCompoundXMLConverter
  • org.biojava.nbio.protmod.structure.ProteinModificationIdentifier
  • org.biojava.nbio.protmod.ProteinModificationImpl (implements java.lang.Comparable<T>, org.biojava.nbio.protmod.ProteinModification)
  • org.biojava.nbio.protmod.ProteinModificationImpl.Builder
  • org.biojava.nbio.protmod.ProteinModificationRegistry
  • org.biojava.nbio.protmod.io.ProteinModificationXmlReader
  • org.biojava.nbio.phosphosite.Site
  • org.biojava.nbio.protmod.structure.StructureAtom
  • org.biojava.nbio.protmod.structure.StructureAtomLinkage
  • org.biojava.nbio.protmod.io.StructureAtomXMLConverter
  • org.biojava.nbio.protmod.structure.StructureGroup (implements java.lang.Comparable<T>)
  • org.biojava.nbio.protmod.io.StructureGroupXMLConverter
  • org.biojava.nbio.protmod.structure.StructureUtil

Interface Hierarchy

• org.biojava.nbio.protmod.ModificationCondition
• org.biojava.nbio.protmod.structure.ModifiedCompound
• org.biojava.nbio.protmod.ProteinModification

Enum Hierarchy

• java.lang.Object
  • java.lang.Enum<E> (implements java.lang.Comparable<T>, java.io.Serializable)
    • org.biojava.nbio.protmod.ModificationCategory
    • org.biojava.nbio.protmod.ModificationOccurrenceType