Hierarchy For All Packages

Package Hierarchies:

• demo,
• org.biojava.nbio.ontology,
• org.biojava.nbio.ontology.io,
• org.biojava.nbio.ontology.obo,
• org.biojava.nbio.ontology.utils

Class Hierarchy

• java.lang.Object
  • org.biojava.nbio.ontology.utils.AbstractAnnotation (implements org.biojava.nbio.ontology.utils.Annotation, java.io.Serializable)
    • org.biojava.nbio.ontology.utils.SmallAnnotation
  • java.util.AbstractMap<K,V> (implements java.util.Map<K,V>)
    • org.biojava.nbio.ontology.utils.SmallMap (implements java.io.Serializable)
    • org.biojava.nbio.ontology.utils.WeakValueHashMap
  • org.biojava.nbio.ontology.AbstractTerm (implements org.biojava.nbio.ontology.Term)
    • org.biojava.nbio.ontology.RemoteTerm.Impl (implements org.biojava.nbio.ontology.RemoteTerm, java.io.Serializable)
    • org.biojava.nbio.ontology.Term.Impl (implements java.io.Serializable, org.biojava.nbio.ontology.Term)
      • org.biojava.nbio.ontology.Variable.Impl (implements org.biojava.nbio.ontology.Variable)
  • org.biojava.nbio.ontology.App
  • org.biojava.nbio.ontology.DefaultOps (implements org.biojava.nbio.ontology.OntologyOps, java.io.Serializable)
  • org.biojava.nbio.ontology.io.GOParser
  • org.biojava.nbio.ontology.IntegerOntology (implements org.biojava.nbio.ontology.Ontology)
  • org.biojava.nbio.ontology.IntegerOntology.IntTerm (implements org.biojava.nbio.ontology.Term)
  • org.biojava.nbio.ontology.obo.OboFileHandler (implements org.biojava.nbio.ontology.obo.OboFileEventListener)
  • org.biojava.nbio.ontology.obo.OboFileParser
  • org.biojava.nbio.ontology.obo.OboFileParser.SOPair
  • org.biojava.nbio.ontology.io.OboParser
  • org.biojava.nbio.ontology.Ontology.Impl (implements org.biojava.nbio.ontology.Ontology, java.io.Serializable)
  • org.biojava.nbio.ontology.OntologyTerm.Impl (implements org.biojava.nbio.ontology.OntologyTerm, java.io.Serializable)
  • org.biojava.nbio.ontology.OntoTools
  • demo.ParseGO
  • java.lang.ref.Reference<T>
    • java.lang.ref.WeakReference<T>
      • org.biojava.nbio.ontology.utils.KeyedWeakReference
  • org.biojava.nbio.ontology.utils.StaticMemberPlaceHolder (implements java.io.Serializable)
  • org.biojava.nbio.ontology.Synonym (implements java.lang.Comparable<T>)
  • org.biojava.nbio.ontology.io.TabDelimParser
  • java.lang.Throwable (implements java.io.Serializable)
    • java.lang.Error
      • java.lang.AssertionError
        • org.biojava.nbio.ontology.utils.AssertionFailure
    • java.lang.Exception
      • org.biojava.nbio.ontology.OntologyException
        • org.biojava.nbio.ontology.AlreadyExistsException
        • org.biojava.nbio.ontology.InvalidTermException
  • org.biojava.nbio.ontology.Triple.Impl (implements java.io.Serializable, org.biojava.nbio.ontology.Triple)

Interface Hierarchy

• org.biojava.nbio.ontology.utils.Annotatable
  • org.biojava.nbio.ontology.OntologyTerm
  • org.biojava.nbio.ontology.RemoteTerm
  • org.biojava.nbio.ontology.Term
    • org.biojava.nbio.ontology.OntologyTerm
    • org.biojava.nbio.ontology.RemoteTerm
    • org.biojava.nbio.ontology.Triple
    • org.biojava.nbio.ontology.Variable
  • org.biojava.nbio.ontology.Triple
  • org.biojava.nbio.ontology.Variable
• org.biojava.nbio.ontology.utils.Annotation
• org.biojava.nbio.ontology.obo.OboFileEventListener
• org.biojava.nbio.ontology.Ontology
• org.biojava.nbio.ontology.OntologyFactory
• org.biojava.nbio.ontology.OntologyOps