org.biojava.nbio.structure.symmetry.core

Class SubunitContactGraph

java.lang.Object

org.biojava.nbio.structure.symmetry.core.SubunitContactGraph

public class SubunitContactGraph
extends Object

Calculates the contact Graph of a set of Subunits, defined as Point arrays. The contact graph is an Undirected Graph with a node for each Subunit and an edge for each interface (contact region) between two nodes.

Author:

Peter Rose, Aleix Lafita

Method Summary

Modifier and Type	Method and Description
static org.jgrapht.UndirectedGraph<Integer,org.jgrapht.graph.DefaultEdge>	calculateGraph(List<javax.vecmath.Point3d[]> caCoords)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Method Detail

calculateGraph

public static org.jgrapht.UndirectedGraph<Integer,org.jgrapht.graph.DefaultEdge> calculateGraph(List<javax.vecmath.Point3d[]> caCoords)