Package org.biojava.nbio.structure.io

Class CAConverter

java.lang.Object

org.biojava.nbio.structure.io.CAConverter

public class CAConverter
extends Object

Converts full atom representations to Calpha only ones.

Version:

%I% %G%

Author:

Andreas Prlic

Constructor Summary

Constructors

Constructor	Description
CAConverter()

Method Summary

Modifier and Type	Method	Description
static List<Chain>	getRepresentativeAtomsOnly(List<Chain> chains)	Convert a List of chain objects to another List of chains, containing Representative atoms only.
static Chain	getRepresentativeAtomsOnly(Chain chain)	Convert a Chain to a new Chain containing C-alpha atoms only.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

CAConverter

public CAConverter()

Method Detail

getRepresentativeAtomsOnly

public static List<Chain> getRepresentativeAtomsOnly(List<Chain> chains)

Convert a List of chain objects to another List of chains, containing Representative atoms only.

Parameters:

chains - list of chains

Returns:

a list of chains

Since:

Biojava 4.1.0

getRepresentativeAtomsOnly

public static Chain getRepresentativeAtomsOnly(Chain chain)

Convert a Chain to a new Chain containing C-alpha atoms only.

Parameters:

chain - to convert

Returns:

a new chain containing Amino acids with C-alpha only.

Since:

Biojava 4.1.0