Package demo
package demo
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ClassesClassDescriptionExample of how to load PDB files using the AtomCache class.A demo for how to use the Berkeley version of SCOP instead of the default UK-SCOPAn example for how to access CATH data.Example of how to run a structure alignment using the CE algorithm.Quick demo of how to call CE-Symm programmatically.This demo shows how to use an alternative ChemCompProvider.Demonstration of how to load a Structure with the SS information, either from the PDB file annotation (Author's assignment) or from the DSSP file in the PDB servers (DSSP assignment).Example for how to load protein structures (from PDB files).An example of how to read MMcif filesAn example of how to convert mmCIF file to PDB fileDemo for running the MultipleMC Algorithm on a protein family.Demo on how to use programatically
QsAlignfor the alignment of quaternary structures.A class demonstrating the use of the SCOP parsing toolsDemonstration on how to use the Secondary Structure Prediction (DSSP) implementation in BioJava and obtain different SS representations and outputs.A demo on how to use the quaternary symmetry detection algorithms.