Uses of Package
org.biojava.nbio.structure.align.multiple
Packages that use org.biojava.nbio.structure.align.multiple
Package
Description
Classes for the alignment of structures.
Serialization and deserialization for structure alignment results (as AFPChain object) to XML.
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Classes in org.biojava.nbio.structure.align.multiple used by org.biojava.nbio.structure.alignClassDescriptionA MultipleAlignment is a Data Structure to store the core information of a multiple structure alignment, as a return type.
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Classes in org.biojava.nbio.structure.align.multiple used by org.biojava.nbio.structure.align.multipleClassDescriptionAbstact implementation of the
ScoresCachewith the shared code used in all objects with a variables cache.A Block is a Data Structure that stores aligned positions of aMultipleAlignmentwith the condition that residues are in a sequential order.General implementation of aBlockthat supports any type of sequential alignment with gaps.A BlockSet is a Data Structure to store a flexible alignment part of a multiple alignment.A general implementation of a BlockSet to store a flexible part of a multiple alignment.A MultipleAlignment is a Data Structure to store the core information of a multiple structure alignment, as a return type.A MultipleAlignmentEnsemble is a collection ofMultipleAlignments that share the same structures (Atoms) and creation properties (algorithm, version, creation time, etc.).A general implementation of aMultipleAlignmentEnsemble.A general implementation of aMultipleAlignment.Interface for classes which implement a temporary cache for various numeric scores, e.g. -
Classes in org.biojava.nbio.structure.align.multiple used by org.biojava.nbio.structure.align.multiple.mcClassDescriptionA MultipleAlignment is a Data Structure to store the core information of a multiple structure alignment, as a return type.
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Classes in org.biojava.nbio.structure.align.multiple used by org.biojava.nbio.structure.align.multiple.utilClassDescriptionA Block is a Data Structure that stores aligned positions of a
MultipleAlignmentwith the condition that residues are in a sequential order.A MultipleAlignment is a Data Structure to store the core information of a multiple structure alignment, as a return type.A MultipleAlignmentEnsemble is a collection ofMultipleAlignments that share the same structures (Atoms) and creation properties (algorithm, version, creation time, etc.). -
Classes in org.biojava.nbio.structure.align.multiple used by org.biojava.nbio.structure.align.quaternaryClassDescriptionA MultipleAlignment is a Data Structure to store the core information of a multiple structure alignment, as a return type.
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Classes in org.biojava.nbio.structure.align.multiple used by org.biojava.nbio.structure.align.xmlClassDescriptionA Block is a Data Structure that stores aligned positions of a
MultipleAlignmentwith the condition that residues are in a sequential order.A BlockSet is a Data Structure to store a flexible alignment part of a multiple alignment.A MultipleAlignment is a Data Structure to store the core information of a multiple structure alignment, as a return type.A MultipleAlignmentEnsemble is a collection ofMultipleAlignments that share the same structures (Atoms) and creation properties (algorithm, version, creation time, etc.).Interface for classes which implement a temporary cache for various numeric scores, e.g. -
Classes in org.biojava.nbio.structure.align.multiple used by org.biojava.nbio.structure.clusterClassDescriptionA MultipleAlignment is a Data Structure to store the core information of a multiple structure alignment, as a return type.
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Classes in org.biojava.nbio.structure.align.multiple used by org.biojava.nbio.structure.symmetry.internalClassDescriptionA MultipleAlignment is a Data Structure to store the core information of a multiple structure alignment, as a return type.
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Classes in org.biojava.nbio.structure.align.multiple used by org.biojava.nbio.structure.symmetry.utilsClassDescriptionA MultipleAlignment is a Data Structure to store the core information of a multiple structure alignment, as a return type.