Uses of Enum Class
org.biojava.nbio.structure.GroupType

Packages that use GroupType

Package	Description
org.biojava.nbio.structure	Interfaces and classes for protein structure (PDB).

Uses of GroupType in org.biojava.nbio.structure

Fields in org.biojava.nbio.structure declared as GroupType

Modifier and Type	Field	Description
static final GroupType	AminoAcidImpl.type	this is an Amino acid. type is "amino".
static final GroupType	HetatomImpl.type	The GroupType is HETATM
static final GroupType	NucleotideImpl.type	this is a "nucleotide", a special occurance of a Hetatom.

Methods in org.biojava.nbio.structure that return GroupType

Modifier and Type	Method	Description
GroupType	Chain.getPredominantGroupType()	Get the predominant GroupType for a given Chain, following these rules: if the ratio of number of residues of a certain GroupType to total non-water residues is above the threshold 0.95, then that GroupType is returned if there is no GroupType that is above the threshold then the GroupType with most members is chosen, logging it
GroupType	ChainImpl.getPredominantGroupType()
GroupType	AminoAcidImpl.getType()
GroupType	Group.getType()	Get Type of group, one of AMINOACID, HETATM or NUCLEOTIDE
GroupType	HetatomImpl.getType()	Get Type of group, one of AMINOACID, HETATM or NUCLEOTIDE
GroupType	NucleotideImpl.getType()
static GroupType	GroupType.valueOf(String name)	Returns the enum constant of this class with the specified name.
static GroupType[]	GroupType.values()	Returns an array containing the constants of this enum class, in the order they are declared.

Methods in org.biojava.nbio.structure with parameters of type GroupType

Modifier and Type	Method	Description
static Set<Group>	StructureTools.getAllGroupsFromSubset(Atom[] atoms, GroupType types)	Expand a set of atoms into all groups from the same structure.
List<Group>	Chain.getAtomGroups(GroupType type)	Return a List of all (observed) Groups of a special type, one of: AMINOACID, HETATM or NUCLEOTIDE.
List<Group>	ChainImpl.getAtomGroups(GroupType type)
List<Group>	Chain.getSeqResGroups(GroupType type)	Returns a List of all SEQRES groups of a special type, one of: AMINOACID, HETATM or NUCLEOTIDE.
List<Group>	ChainImpl.getSeqResGroups(GroupType type)