Uses of Class
org.biojava.nbio.structure.symmetry.internal.CeSymmResult

Packages that use CeSymmResult

Package	Description
org.biojava.nbio.structure.symmetry.internal
org.biojava.nbio.structure.symmetry.utils

Uses of CeSymmResult in org.biojava.nbio.structure.symmetry.internal

Methods in org.biojava.nbio.structure.symmetry.internal that return CeSymmResult

Modifier and Type	Method	Description
protected static CeSymmResult	CeSymm.align(Atom[] atoms, CESymmParameters params)
static CeSymmResult	CeSymm.analyze(Atom[] atoms)	Analyze the symmetries of the input Atom array using the DEFAULT parameters.
static CeSymmResult	CeSymm.analyze(Atom[] atoms, CESymmParameters params)	Analyze the symmetries of the input Atom array using the provided parameters.
static CeSymmResult	CeSymm.analyzeLevel(Atom[] atoms, CESymmParameters params)	Analyze a single level of symmetry.
CeSymmResult	CeSymmIterative.execute(Atom[] atoms)	This method uses iteratively CeSymm to calculate all symmetries in the input array of atoms and organize them in a multiple alignment of the repeats.

Constructors in org.biojava.nbio.structure.symmetry.internal with parameters of type CeSymmResult

Modifier	Constructor	Description
	SymmOptimizer(CeSymmResult symmResult)	Constructor with a seed MultipleAlignment storing a refined symmetry alignment of the repeats.

Uses of CeSymmResult in org.biojava.nbio.structure.symmetry.utils

Methods in org.biojava.nbio.structure.symmetry.utils with parameters of type CeSymmResult

Modifier and Type	Method	Description
static List<Structure>	SymmetryTools.divideStructure(CeSymmResult symmetry)	Method that converts the symmetric units of a structure into different structures, so that they can be individually visualized.
static QuatSymmetryResults	SymmetryTools.getQuaternarySymmetry(CeSymmResult result)	Given a symmetry result, it calculates the overall global symmetry, factoring out the alignment and detection steps of QuatSymmetryDetector algorithm.
static MultipleAlignment	SymmetryTools.toFullAlignment(CeSymmResult symm)	Method that converts a repeats symmetric alignment into an alignment of whole structures.
static MultipleAlignment	SymmetryTools.toRepeatsAlignment(CeSymmResult result)	Method that converts a symmetry alignment into an alignment of the repeats only, as new independent structures.