Uses of Package
org.biojava.bio.alignment

Packages that use org.biojava.bio.alignment

Package	Description
org.biojava.bio.alignment
org.biojava.bio.dist	Probability distributions over Alphabets.
org.biojava.bio.dp	HMM and Dynamic Programming Algorithms.
org.biojava.bio.program.phred	Parser for Phred output
org.biojava.bio.search	Interfaces and classes for representing sequence similarity search results.
org.biojava.bio.seq.homol	The classes and interfaces for defining sequence similarity and honology.
org.biojava.bio.seq.impl	Standard in-memory implementations of Sequence and Feature.
org.biojava.bio.seq.io	Classes and interfaces for processing and producing flat-file representations of sequences.
org.biojava.bio.symbol	Representation of the Symbols that make up a sequence, and locations within them.

Classes in org.biojava.bio.alignment used by org.biojava.bio.alignment

Class	Description
Alignment	An alignment containing multiple SymbolLists.

Classes in org.biojava.bio.alignment used by org.biojava.bio.dist

Class	Description
Alignment	An alignment containing multiple SymbolLists.

Classes in org.biojava.bio.alignment used by org.biojava.bio.dp

Class	Description
Alignment	An alignment containing multiple SymbolLists.

Classes in org.biojava.bio.alignment used by org.biojava.bio.program.phred

Class	Description
Alignment	An alignment containing multiple SymbolLists.

Classes in org.biojava.bio.alignment used by org.biojava.bio.search

Class	Description
Alignment	An alignment containing multiple SymbolLists.

Classes in org.biojava.bio.alignment used by org.biojava.bio.seq.homol

Class	Description
Alignment	An alignment containing multiple SymbolLists.

Classes in org.biojava.bio.alignment used by org.biojava.bio.seq.impl

Class	Description
Alignment	An alignment containing multiple SymbolLists.

Classes in org.biojava.bio.alignment used by org.biojava.bio.seq.io

Class	Description
Alignment	An alignment containing multiple SymbolLists.

Classes in org.biojava.bio.alignment used by org.biojava.bio.symbol

Class	Description
Alignment	An alignment containing multiple SymbolLists.