Uses of Interface
org.biojava.bio.program.homologene.SimilarityType

Packages that use SimilarityType

Package	Description
org.biojava.bio.program.homologene	Support classes for Homologene data.

Uses of SimilarityType in org.biojava.bio.program.homologene

Classes in org.biojava.bio.program.homologene that implement SimilarityType

Modifier and Type	Class	Description
static class	SimilarityType.PlaceHolder

Fields in org.biojava.bio.program.homologene declared as SimilarityType

Modifier and Type	Field	Description
static SimilarityType	SimilarityType.CURATED
static SimilarityType	SimilarityType.MULTIPLE
static SimilarityType	SimilarityType.TWIN

Methods in org.biojava.bio.program.homologene that return SimilarityType

Modifier and Type	Method	Description
SimilarityType	OrthoPair.getSimilarity()	gets the second orthologue in the orthology relationship.
SimilarityType	SimpleOrthoPair.getSimilarity()

Methods in org.biojava.bio.program.homologene with parameters of type SimilarityType

Modifier and Type	Method	Description
OrthoPair	HomologeneDB.createOrthoPair(Orthologue first, Orthologue second, SimilarityType type, double percentIdentity)	Create a computed orthology entry.
OrthoPair	SimpleHomologeneDB.createOrthoPair(Orthologue first, Orthologue second, SimilarityType type, double percentIdentity)

Constructors in org.biojava.bio.program.homologene with parameters of type SimilarityType

Constructor	Description
BySimilarityType(SimilarityType type)
SimpleOrthoPair(Orthologue first, Orthologue second, SimilarityType type, double percentIdentity)	constructor for the computed form of an orthology relationship.