Package org.biojava.bio.program.tagvalue

Class AnnotationBuilder

java.lang.Object

org.biojava.bio.program.tagvalue.AnnotationBuilder

All Implemented Interfaces:

TagValueListener

public class AnnotationBuilder
extends Object
implements TagValueListener

Builds an Annotation tree from TagValue events using an AnnotationType to work out which fields are of what type.

Since:

1.2

Author:

Matthew Pocock

Constructor Summary

Constructors

Constructor	Description
AnnotationBuilder(AnnotationType type)	Make a new AnnotationBuilder that will build Annotation instances of a given type.

Method Summary

Modifier and Type	Method	Description
void	endRecord()	The current record has ended.
void	endTag()	End the current tag.
Annotation	getLast()	Get the last complete annotation built.
void	startRecord()	A new record is about to start.
void	startTag(Object tag)	Start a new tag.
void	value(TagValueContext ctxt, Object value)	A value has been seen.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

AnnotationBuilder

public AnnotationBuilder(AnnotationType type)

Make a new AnnotationBuilder that will build Annotation instances of a given type.

The type is used to provide appropriate accessors for properties. As tag -value events stream through this TagValueListener, they will be matched against the properties of the annotation type. As sub-trees of events are pushed, child annotation bundles will be pushed into the appropriate properties. If any of the tag-value events are of a type that are not accepted by the annotation type, a ClassCastException will be thrown.

Parameters:

type - the AnnotationType stating what will be built and how

Throws:

ClassCastException - if any of the tag-value events are of inappropriate type

Method Detail

getLast

public Annotation getLast()

Get the last complete annotation built.

The value of this is undefined before the first annotation has been built and during the parsing of an event stream.

Returns:

the Annotation that was last built

startRecord

public void startRecord()

Description copied from interface: TagValueListener

A new record is about to start.

Specified by:

startRecord in interface TagValueListener

endRecord

public void endRecord()

Description copied from interface: TagValueListener

The current record has ended.

Specified by:

endRecord in interface TagValueListener

startTag

public void startTag(Object tag)

Description copied from interface: TagValueListener

Start a new tag.

Specified by:

startTag in interface TagValueListener

Parameters:

tag - the Object representing the new tag

value

public void value(TagValueContext ctxt,
                  Object value)

Description copied from interface: TagValueListener

A value has been seen.

Specified by:

value in interface TagValueListener

Parameters:

ctxt - a TagValueContext that could be used to push a sub-document

value - the value Object observed

endTag

public void endTag()

Description copied from interface: TagValueListener

End the current tag.

Specified by:

endTag in interface TagValueListener