Uses of Interface
org.biojava.bio.program.tagvalue.TagValueListener

Packages that use TagValueListener

Package	Description
org.biojava.bio.annodb	Databases of generic structured data (annotation) objects.
org.biojava.bio.program.formats	Experimental parsers using the tagvalue framework.
org.biojava.bio.program.tagvalue	Process files as streams of records, each with tags with values.
org.biojava.bio.program.unigene	Objects for representing Unigene clusters.

Uses of TagValueListener in org.biojava.bio.annodb

Methods in org.biojava.bio.annodb with parameters of type TagValueListener

Modifier and Type	Method	Description
ParserListener	IndexedAnnotationDB.ParserListenerFactory.getParserListener(TagValueListener listener)	Get the ParserListener for a TagValueListener.
ParserListener	IndexedAnnotationDB.StaticMethodRPFactory.getParserListener(TagValueListener tvl)

Uses of TagValueListener in org.biojava.bio.program.formats

Methods in org.biojava.bio.program.formats with parameters of type TagValueListener

Modifier and Type	Method	Description
ParserListener	Embl.getParserListener(TagValueListener listener)
ParserListener	Enzyme.getParserListener(TagValueListener listener)
ParserListener	Format.getParserListener(TagValueListener listener)	Retrieve a ParserListener pair for the format that will pass all events on to a listener.
ParserListener	Ligand.Compound.getParserListener(TagValueListener listener)
ParserListener	Ligand.Enzyme.getParserListener(TagValueListener listener)
ParserListener	Ligand.Reaction.getParserListener(TagValueListener listener)
ParserListener	Swissprot.getParserListener(TagValueListener listener)

Uses of TagValueListener in org.biojava.bio.program.tagvalue

Subinterfaces of TagValueListener in org.biojava.bio.program.tagvalue

Modifier and Type	Interface	Description
interface	TagValueWrapper	Interface for TagValueListeners that wrap other TagValueListeners

Classes in org.biojava.bio.program.tagvalue that implement TagValueListener

Modifier and Type	Class	Description
class	AbstractWrapper	An abstract TagValueWrapper that does nothing!
class	Aggregator	Joins multipel values into single values.
class	AnnotationBuilder	Builds an Annotation tree from TagValue events using an AnnotationType to work out which fields are of what type.
class	Echo	A simple listener that just echoes events back to the console.
class	Indexer	Listens to tag-value events and passes on indexing events to an IndexStore.
class	Indexer2	Listens to tag-value events and passes on indexing events to an IndexStore.
class	MultiTagger	Partician multiple values for a tag into their own tag groups.
class	RegexFieldFinder
class	SimpleTagValueWrapper	Helper class to wrap one TagValueListener inside another one.
class	StateMachine	This class implements a state machine for parsing events from the Parser class.
class	StateMachine.SimpleStateListener	a basic listener for a State.
class	TagDelegator	Pushes a new parser and listener, or delegate to a listener depending on the tag.
class	TagDropper	Silently drop all tags except those specified, and pass the rest onto a delegate.
class	TagRenamer	Rename tags using a TagMapper.
class	ValueChanger	Intercept the values associated with some tags and change them systematically.

Fields in org.biojava.bio.program.tagvalue declared as TagValueListener

Modifier and Type	Field	Description
protected TagValueListener	StateMachine.delegate

Methods in org.biojava.bio.program.tagvalue that return TagValueListener

Modifier and Type	Method	Description
TagValueListener	AbstractWrapper.getDelegate()
TagValueListener	SimpleTagValueWrapper.getDelegate()
TagValueListener	StateMachine.getDelegate()
TagValueListener	TagValueWrapper.getDelegate()	get listener to which all calls will be delegated
TagValueListener	ParserListener.getListener()	getListener returns the listener of the pair.
TagValueListener	StateMachine.BasicState.getListener()	return the TagValueListener assigned to this State.
TagValueListener	StateMachine.State.getListener()
TagValueListener	TagDelegator.getListener(Object tag)

Methods in org.biojava.bio.program.tagvalue with parameters of type TagValueListener

Modifier and Type	Method	Description
static ParserListener	Formats.createEmblParserListener(TagValueListener listener)
static ParserListener	Formats.createSwissprotParserListener(TagValueListener listener)
void	TagValueContext.pushParser(TagValueParser subParser, TagValueListener subListener)	Push a parser and listener pair onto the parser stack.
boolean	Parser.read(BufferedReader reader, TagValueParser parser, TagValueListener listener)
void	AbstractWrapper.setDelegate(TagValueListener delegate)
void	SimpleTagValueWrapper.setDelegate(TagValueListener delegate)
void	StateMachine.setDelegate(TagValueListener delegate)	TagValueWrapper interface
void	TagValueWrapper.setDelegate(TagValueListener delegate)	set listener to which all calls will be delegated
void	StateMachine.BasicState.setListener(TagValueListener listener)	set a TagValueListener for this State.
void	TagDelegator.setListener(Object tag, TagValueListener listener)
void	TagDelegator.setParserListener(Object tag, TagValueParser parser, TagValueListener listener)

Constructors in org.biojava.bio.program.tagvalue with parameters of type TagValueListener

Constructor	Description
Aggregator(TagValueListener listener, BoundaryFinder observer, String joiner)
BasicState(String label, TagValueListener listener)	when this constructor is used, a fixed listener is used with this state.
MultiTagger(TagValueListener listener, BoundaryFinder observer)
ParserListener(TagValueParser parser, TagValueListener listener)	Creates a new ParserListener instance.
RegexFieldFinder(TagValueListener delegate, Pattern pattern, String[] tags, boolean inLine)	Creates a new RegexFiledFinder.
SimpleTagValueWrapper(TagValueListener delegate)	Build a SimpleTagValueWrapper that will forward everything to a delegate.
TagDelegator(TagValueListener delegate)
TagDropper(TagValueListener tvl)	Create a new TagDropper that will pass on all retained tags and values to tvl.
TagRenamer(TagValueListener delegate, PropertyChanger mapper)	Build a new TagRenamer with a delegate and mapper.
ValueChanger(TagValueListener delegate)
ValueChanger(TagValueListener delegate, ChangeTable changeTable)	Create a new changer that will pass the modified event stream to a delegate.

Uses of TagValueListener in org.biojava.bio.program.unigene

Methods in org.biojava.bio.program.unigene with parameters of type TagValueListener

Modifier and Type	Method	Description
static ParserListener	UnigeneTools.buildDataParser(TagValueListener listener)	Generate a tag-value parser for unigene data files that will pass all parsing events on to your listener.
static ParserListener	UnigeneTools.buildLibInfoParser(TagValueListener listener)	Generate a tag-value parser for the library info unigene files.