Uses of Interface
org.biojava.bio.seq.io.agave.AGAVEAnnotFilter

Packages that use AGAVEAnnotFilter

Package	Description
org.biojava.bio.seq.io.agave	Classes for converting between AGAVE XML and BioJava objects.

Uses of AGAVEAnnotFilter in org.biojava.bio.seq.io.agave

Classes in org.biojava.bio.seq.io.agave that implement AGAVEAnnotFilter

Modifier and Type	Class	Description
class	Agave2AgaveAnnotFilter	Dumping the data from biojava with source of agave into agave format
class	Embl2AgaveAnnotFilter	Map EMBL data into AGAVE format
class	SimpleAnnotFilter	Basic implementation of AGAVEAnnotFilter

Fields in org.biojava.bio.seq.io.agave declared as AGAVEAnnotFilter

Modifier and Type	Field	Description
protected AGAVEAnnotFilter	AgaveWriter.mAnnotFilter	The AnnotationMap to use for getting AGAVE XML attributes from a Sequence Annotation.

Methods in org.biojava.bio.seq.io.agave that return AGAVEAnnotFilter

Modifier and Type	Method	Description
AGAVEAnnotFilter	AGAVEAnnotFilterFactory.getInstance()

Constructors in org.biojava.bio.seq.io.agave with parameters of type AGAVEAnnotFilter

Constructor	Description
AgaveWriter(AGAVEAnnotFilter filter)	Construct with data source specific annotation to attribute mapping.