Uses of Interface
org.biojava.bio.taxa.Taxon

Packages that use Taxon

Package	Description
org.biojava.bio.taxa	Taxonomy object for representing species information.

Uses of Taxon in org.biojava.bio.taxa

Classes in org.biojava.bio.taxa that implement Taxon

Modifier and Type	Class	Description
class	AbstractTaxon	Deprecated. replaced by classes in org.biojavax.bio.taxa
class	SimpleTaxon	Deprecated. replaced by classes in org.biojavax.bio.taxa
class	WeakTaxon	Deprecated. replaced by classes in org.biojavax.bio.taxa

Fields in org.biojava.bio.taxa declared as Taxon

Modifier and Type	Field	Description
protected Taxon	SimpleTaxon.parent	Deprecated.
protected Taxon	WeakTaxon.parent	Deprecated.

Methods in org.biojava.bio.taxa that return Taxon

Modifier and Type	Method	Description
Taxon	SimpleTaxonFactory.addChild(Taxon parent, Taxon child)	Deprecated.
Taxon	TaxonFactory.addChild(Taxon parent, Taxon child)	Deprecated. Add a taxon as a child to a parent.
Taxon	WeakTaxonFactory.addChild(Taxon parent, Taxon child)	Deprecated.
Taxon	SimpleTaxonFactory.createTaxon(String scientificName, String commonName)	Deprecated.
Taxon	TaxonFactory.createTaxon(String scientificName, String commonName)	Deprecated. Create a new orphan Taxon with a given scientific and common name.
Taxon	WeakTaxonFactory.createTaxon(String scientificName, String commonName)	Deprecated.
Taxon	SimpleTaxon.getParent()	Deprecated.
Taxon	Taxon.getParent()	Deprecated. The parent of this Taxon.
Taxon	WeakTaxon.getParent()	Deprecated.
Taxon	SimpleTaxonFactory.getRoot()	Deprecated.
Taxon	TaxonFactory.getRoot()	Deprecated. Retrieve the root upon which all rooted Taxon that this factory knows about are rooted.
Taxon	WeakTaxonFactory.getRoot()	Deprecated.
Taxon	SimpleTaxonFactory.importTaxon(Taxon taxon)	Deprecated.
Taxon	TaxonFactory.importTaxon(Taxon source)	Deprecated. Import a Taxon and all its children into the implementation provided by this factory.
Taxon	WeakTaxonFactory.importTaxon(Taxon taxon)	Deprecated.
Taxon	EbiFormat.parse(TaxonFactory taxonFactory, String taxonString)	Deprecated.
Taxon	TaxonParser.parse(TaxonFactory taxonFactory, String taxonString)	Deprecated. Convert a stringified Taxon into a Taxon instance.
Taxon	SimpleTaxonFactory.removeChild(Taxon parent, Taxon child)	Deprecated.
Taxon	TaxonFactory.removeChild(Taxon parent, Taxon child)	Deprecated. Remove a Taxon as a child to this one.
Taxon	WeakTaxonFactory.removeChild(Taxon parent, Taxon child)	Deprecated.
Taxon	SimpleTaxonFactory.search(Object id)	Deprecated.
Taxon	TaxonFactory.search(Object id)	Deprecated. Retrieve a Taxon that matches some ID.
Taxon	WeakTaxonFactory.search(Object id)	Deprecated.

Methods in org.biojava.bio.taxa with parameters of type Taxon

Modifier and Type	Method	Description
Taxon	SimpleTaxonFactory.addChild(Taxon parent, Taxon child)	Deprecated.
Taxon	TaxonFactory.addChild(Taxon parent, Taxon child)	Deprecated. Add a taxon as a child to a parent.
Taxon	WeakTaxonFactory.addChild(Taxon parent, Taxon child)	Deprecated.
Taxon	SimpleTaxonFactory.importTaxon(Taxon taxon)	Deprecated.
Taxon	TaxonFactory.importTaxon(Taxon source)	Deprecated. Import a Taxon and all its children into the implementation provided by this factory.
Taxon	WeakTaxonFactory.importTaxon(Taxon taxon)	Deprecated.
Taxon	SimpleTaxonFactory.removeChild(Taxon parent, Taxon child)	Deprecated.
Taxon	TaxonFactory.removeChild(Taxon parent, Taxon child)	Deprecated. Remove a Taxon as a child to this one.
Taxon	WeakTaxonFactory.removeChild(Taxon parent, Taxon child)	Deprecated.
String	EbiFormat.serialize(Taxon taxon)	Deprecated.
String	TaxonParser.serialize(Taxon taxon)	Deprecated. Convert a Taxon into a stringified representation.
String	EbiFormat.serializeSource(Taxon taxon)	Deprecated.
String	EbiFormat.serializeXRef(Taxon taxon)	Deprecated.