Uses of Interface
org.biojava.utils.ParseErrorListener

Packages that use ParseErrorListener

Package	Description
org.biojava.bio.program.phred	Parser for Phred output
org.biojava.bio.seq.io	Classes and interfaces for processing and producing flat-file representations of sequences.
org.biojava.utils	Miscellaneous utility classes used by other BioJava components.

Uses of ParseErrorListener in org.biojava.bio.program.phred

Classes in org.biojava.bio.program.phred that implement ParseErrorListener

Modifier and Type	Class	Description
class	PhredFormat	Format object representing Phred Quality files.

Methods in org.biojava.bio.program.phred with parameters of type ParseErrorListener

Modifier and Type	Method	Description
void	PhredFormat.addParseErrorListener(ParseErrorListener theListener)	Adds a parse error listener to the list of listeners if it isn't already included.
void	PhredFormat.removeParseErrorListener(ParseErrorListener theListener)	Removes a parse error listener from the list of listeners if it is included.

Uses of ParseErrorListener in org.biojava.bio.seq.io

Classes in org.biojava.bio.seq.io that implement ParseErrorListener

Modifier and Type	Class	Description
class	EmblLikeFormat	Deprecated. Use org.biojavax.bio.seq.io.EMBLFormat instead
class	FastaFormat	Deprecated. Use org.biojavax.bio.seq.io.FastaFormat
class	GenbankFormat	Deprecated. Use org.biojavax.bio.seq.io.GenbankFormat
class	GenbankXmlFormat	Deprecated. Use org.biojavax.bio.seq.io.INSDseqFormat
class	GenpeptFormat	Deprecated. Use org.biojavax.bio.seq.io framework instead
class	StreamReader	Parses a stream into sequences.

Methods in org.biojava.bio.seq.io with parameters of type ParseErrorListener

Modifier and Type	Method	Description
void	EmblLikeFormat.addParseErrorListener(ParseErrorListener theListener)	Deprecated. Adds a parse error listener to the list of listeners if it isn't already included.
void	EmblProcessor.addParseErrorListener(ParseErrorListener theListener)	Deprecated. Adds a parse error listener to the list of listeners if it isn't already included.
void	FastaFormat.addParseErrorListener(ParseErrorListener theListener)	Deprecated. Adds a parse error listener to the list of listeners if it isn't already included.
void	GenbankFormat.addParseErrorListener(ParseErrorListener theListener)	Deprecated. Adds a parse error listener to the list of listeners if it isn't already included.
void	GenbankProcessor.addParseErrorListener(ParseErrorListener theListener)	Deprecated. Adds a parse error listener to the list of listeners if it isn't already included.
void	SwissprotProcessor.addParseErrorListener(ParseErrorListener theListener)	Deprecated. Adds a parse error listener to the list of listeners if it isn't already included.
void	EmblLikeFormat.removeParseErrorListener(ParseErrorListener theListener)	Deprecated. Removes a parse error listener from the list of listeners if it is included.
void	EmblProcessor.removeParseErrorListener(ParseErrorListener theListener)	Deprecated. Removes a parse error listener from the list of listeners if it is included.
void	FastaFormat.removeParseErrorListener(ParseErrorListener theListener)	Deprecated. Removes a parse error listener from the list of listeners if it is included.
void	GenbankFormat.removeParseErrorListener(ParseErrorListener theListener)	Deprecated. Removes a parse error listener from the list of listeners if it is included.
void	GenbankProcessor.removeParseErrorListener(ParseErrorListener theListener)	Deprecated. Removes a parse error listener from the list of listeners if it is included.
void	SwissprotProcessor.removeParseErrorListener(ParseErrorListener theListener)	Deprecated. Removes a parse error listener from the list of listeners if it is included.

Uses of ParseErrorListener in org.biojava.utils

Methods in org.biojava.utils with parameters of type ParseErrorListener

Modifier and Type	Method	Description
void	ParseErrorSource.addParseErrorListener(ParseErrorListener theListener)	Adds a parse error listener to the list of listeners.
void	ParseErrorSource.removeParseErrorListener(ParseErrorListener theListener)	Removes a parse error listener from the list of listeners.